| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,364,863 – 24,364,957 |
| Length | 94 |
| Max. P | 0.999957 |
| Location | 24,364,863 – 24,364,957 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 94.79 |
| Mean single sequence MFE | -31.34 |
| Consensus MFE | -28.66 |
| Energy contribution | -28.86 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.14 |
| Mean z-score | -3.91 |
| Structure conservation index | 0.91 |
| SVM decision value | 4.86 |
| SVM RNA-class probability | 0.999957 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24364863 94 + 27905053 GAGGUAAUGGCAUAAUUUCUGGGCCAGUGGGUGGAGAACCACCGAUCUGGCUGUUUGAAGUAAGAUCGUGAUGCCGGAAAUUGAGAUGUUAAAA .......(((((((((((((((.......(((((....)))))(((((.(((......))).)))))......)))))))))...))))))... ( -30.50) >DroSec_CAF1 187303 94 + 1 GAGGUAAUAGCAAAAUUUCUGGGACAGUGGGUGGAGAACCACCGAUCUGACUGUUUGAAGUAAGAUCGUGAUGCCGGAAAUUGAGAUGUUAAAA ....(((((....(((((((((.(((...(((((....)))))(((((.(((......))).))))).)).).)))))))))....)))))... ( -30.70) >DroSim_CAF1 195208 94 + 1 GAGGUAAAGGCACAAUUUUUGGGACAGUGGGUGGAGAACCACCGAUCUGGCUGUUUGAAGUAAGAUCGUGAUGCCGGAAAUUGAGAUGUUAAAA ........((((((((((((((.(((...(((((....)))))(((((.(((......))).))))).)).).))))))))))...)))).... ( -28.70) >DroEre_CAF1 199116 94 + 1 GAGGUAAUGGCACAAUUUCUGGACCAAUGGGUGGAGAACCACCGAUCUGGCUGUUUGAAGUAUGAUCGUGGUGCCGGAAAUUGAGAUGUUAAAA .......(((((((((((((((((((...(((((....)))))((((..(((......)))..)))).)))).))))))))))...)))))... ( -34.90) >DroYak_CAF1 193154 94 + 1 GAGGUAAUGGCACAAUUUCUGGGCCAGUGGGUGGAGAACCACCGAUCUGGCUGUUUGAAGUAAAAUCGUGAUGCCGGAAAUUGAGAUGUUAAAA .......(((((((((((((((((((((.(((((....))))).).))))).((((......)))).......))))))))))...)))))... ( -31.90) >consensus GAGGUAAUGGCACAAUUUCUGGGCCAGUGGGUGGAGAACCACCGAUCUGGCUGUUUGAAGUAAGAUCGUGAUGCCGGAAAUUGAGAUGUUAAAA .......(((((((((((((((.......(((((....)))))(((((.(((......))).)))))......))))))))))...)))))... (-28.66 = -28.86 + 0.20)
| Location | 24,364,863 – 24,364,957 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 94.79 |
| Mean single sequence MFE | -22.32 |
| Consensus MFE | -19.32 |
| Energy contribution | -19.20 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.29 |
| Mean z-score | -3.93 |
| Structure conservation index | 0.87 |
| SVM decision value | 4.00 |
| SVM RNA-class probability | 0.999750 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24364863 94 - 27905053 UUUUAACAUCUCAAUUUCCGGCAUCACGAUCUUACUUCAAACAGCCAGAUCGGUGGUUCUCCACCCACUGGCCCAGAAAUUAUGCCAUUACCUC ...................(((((...((.......)).....(((((...(((((....)))))..))))).........)))))........ ( -23.10) >DroSec_CAF1 187303 94 - 1 UUUUAACAUCUCAAUUUCCGGCAUCACGAUCUUACUUCAAACAGUCAGAUCGGUGGUUCUCCACCCACUGUCCCAGAAAUUUUGCUAUUACCUC ............((((((.((......(((((.(((......))).)))))(((((....))))).......)).))))))............. ( -20.30) >DroSim_CAF1 195208 94 - 1 UUUUAACAUCUCAAUUUCCGGCAUCACGAUCUUACUUCAAACAGCCAGAUCGGUGGUUCUCCACCCACUGUCCCAAAAAUUGUGCCUUUACCUC ...................(((((...(((((..((......))..)))))(((((....)))))................)))))........ ( -19.70) >DroEre_CAF1 199116 94 - 1 UUUUAACAUCUCAAUUUCCGGCACCACGAUCAUACUUCAAACAGCCAGAUCGGUGGUUCUCCACCCAUUGGUCCAGAAAUUGUGCCAUUACCUC .........(.(((((((.((.((((.((((...((......))...))))(((((....)))))...)))))).))))))).).......... ( -24.40) >DroYak_CAF1 193154 94 - 1 UUUUAACAUCUCAAUUUCCGGCAUCACGAUUUUACUUCAAACAGCCAGAUCGGUGGUUCUCCACCCACUGGCCCAGAAAUUGUGCCAUUACCUC .........(.(((((((.((......((.......)).....(((((...(((((....)))))..))))))).))))))).).......... ( -24.10) >consensus UUUUAACAUCUCAAUUUCCGGCAUCACGAUCUUACUUCAAACAGCCAGAUCGGUGGUUCUCCACCCACUGGCCCAGAAAUUGUGCCAUUACCUC ...................(((((...((.......)).....(((((...(((((....)))))..))))).........)))))........ (-19.32 = -19.20 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:27:08 2006