Locus 9126

Sequence ID 3R_DroMel_CAF1
Location 24,361,760 – 24,361,861
Length 101
Max. P 0.706652
window14599

overview

Window 9

Location 24,361,760 – 24,361,861
Length 101
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 80.13
Mean single sequence MFE -24.48
Consensus MFE -16.91
Energy contribution -16.77
Covariance contribution -0.13
Combinations/Pair 1.30
Mean z-score -1.48
Structure conservation index 0.69
SVM decision value 0.37
SVM RNA-class probability 0.706652
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24361760 101 - 27905053
CUAAUUAAGUGCUGAAAUAUGCCAGCUCAUUUGGCAUCCUGUGAGCACAAU-UUCUGUGUUAUUU--UUUUAUCGCAAGUCGGCGCUAAAAUGUUUACAC-AUAG
........(((((.(...(((((((.....)))))))....).)))))...-...(((((.....--(((((.(((......))).))))).....))))-)... ( -27.30)
>DroSec_CAF1 184211 98 - 1
CUAAUUAAGUGCUGAAAUAUGCCAGCUCAUUUGGCAUCCUGUGAGCGCACCGUUGUGUG----UU--UUUUAUCGCAAGUCGGCGCUAAAAUGUUUACAC-AGAG
........(((((.(...(((((((.....)))))))....).)))))....(((((((----..--(((((.(((......))).)))))....)))))-)).. ( -28.30)
>DroSim_CAF1 192114 98 - 1
CUAAUUAAGUGCUGAAAUAUGCCAGCUCAUUUGGCAUCCUGUGAGCGCACCGUUGUGUG----UU--UUUUAUCGCAAGUCGGCGCUAAAAUGUUUACAC-AGAG
........(((((.(...(((((((.....)))))))....).)))))....(((((((----..--(((((.(((......))).)))))....)))))-)).. ( -28.30)
>DroEre_CAF1 195994 100 - 1
CUAAUUAAGUGCUGAAAUAUGCCAGCUCAUUUGGCAUCCUGUGAGCAGCAU-UUCUACUUU-UUU--CUUUAUCGCAAGUCGGCGCUAAAAUGUUUACAC-AGCG
.......((((((((...((((..((((((..((...)).)))))).))))-.........-...--......(....))))))))).............-.... ( -23.30)
>DroWil_CAF1 156570 89 - 1
CUAAUUAUGUGCUGAUAUAUGCCAGAUUAGGGGGCAUCCUGUGAGAACUAU----------------UUUUAUCAUUAACUGACGUGGAAAUGUUUAUAAAAGCA
.........((((..((((((((.........))))((((((.((......----------------............)).))).)))......))))..)))) ( -13.87)
>DroYak_CAF1 189912 102 - 1
CUAAUUAAGUGCUGAAAUAUGCUAGCUCAUUUGGCAUCCUGUGAGCAGCAU-UUCCACUUU-UUUUACUUUAUCGCAAGUCGGCGCUAAAAUGUUUACAC-AGAG
.......((((((((...(((((.((((((..((...)).)))))))))))-.........-...........(....))))))))).............-.... ( -25.80)
>consensus
CUAAUUAAGUGCUGAAAUAUGCCAGCUCAUUUGGCAUCCUGUGAGCACAAU_UUCUGUG____UU__UUUUAUCGCAAGUCGGCGCUAAAAUGUUUACAC_AGAG
.......((((((((...(((((((.....)))))))..(((((............................)))))..)))))))).................. (-16.91 = -16.77 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:27:06 2006