Locus 9125

Sequence ID 3R_DroMel_CAF1
Location 24,361,471 – 24,361,573
Length 102
Max. P 0.873616
window14598

overview

Window 8

Location 24,361,471 – 24,361,573
Length 102
Sequences 3
Columns 102
Reading direction reverse
Mean pairwise identity 82.03
Mean single sequence MFE -33.52
Consensus MFE -23.86
Energy contribution -24.87
Covariance contribution 1.00
Combinations/Pair 1.10
Mean z-score -2.17
Structure conservation index 0.71
SVM decision value 0.88
SVM RNA-class probability 0.873616
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24361471 102 - 27905053
GUGGGGCUUGGUGGAGGUGGAGAUGUGGGCAUGUGGGGCUGUGUGCAUGUGAUGAUGGGAAGUCGCGACAGCGGCGUUAUGAUGCCUCUAAUUAGCUGCACA
(((.((((...(((((((....(((((.((((........)))).))))).((.((((...(((((....))))).)))).)))))))))...)))).))). ( -38.30)
>DroSec_CAF1 183922 102 - 1
GUGCGUCUUGGUAGAGGUGGAGAUGUGGGGAUGUGAGGCUGUGGGUAUGUGAGGAUGGGAAGUCGCGACAGCGGCGUUAUGAUGCCUCUAAUUAGCUGCACA
(((((.((...((((((((.............((((.(((((..((.(((((..........))))))).))))).))))..))))))))...)).))))). ( -31.36)
>DroEre_CAF1 195722 86 - 1
GCGGGGCUUGGUGGAGGUGGAG----------------AUGUGGGGAUGUGGGGCUGGGAAGUCGCGACAGCGGCGUUAUGAUGCCUCUAAUUAGCUGCACA
(.(.((((...((((((((..(----------------((((.(...(((.(((((....)))).).))).).)))))....))))))))...)))).).). ( -30.90)
>consensus
GUGGGGCUUGGUGGAGGUGGAGAUGUGGG_AUGUG_GGCUGUGGGCAUGUGAGGAUGGGAAGUCGCGACAGCGGCGUUAUGAUGCCUCUAAUUAGCUGCACA
(((.((((...(((((((...................((.....))...............(((((....)))))........)))))))...)))).))). (-23.86 = -24.87 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:27:05 2006