Locus 9122

Sequence ID 3R_DroMel_CAF1
Location 24,359,168 – 24,359,272
Length 104
Max. P 0.530771
window14594

overview

Window 4

Location 24,359,168 – 24,359,272
Length 104
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 85.65
Mean single sequence MFE -35.19
Consensus MFE -25.79
Energy contribution -26.24
Covariance contribution 0.45
Combinations/Pair 1.19
Mean z-score -2.30
Structure conservation index 0.73
SVM decision value -0.01
SVM RNA-class probability 0.530771
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24359168 104 + 27905053
AUAGCGGCU--CUAAGCGGUGAUAAUACU---CUAAGGGGCCCUG----GCAAUCACUGCAUAGAUGCAGUGAGAGUGCAGGGAAAUGC----UCCCUUUU---CAGCUACACAAUUGCA
...((((((--((....((((....))))---....))))))(((----(((.((((((((....))))))))...)))(((((.....----)))))...---)))..........)). ( -35.70)
>DroSec_CAF1 181687 104 + 1
AUAGCGGCU--CUAAGCGGUGAUAAUACU---UUAAGGGGCCCUG----GCAAUCACUGCAUAGAUGCAGUGAGAGUGCAGGGAAAUGC----UCCCCUUU---CAGCUACACAAUUGCA
.........--....(((((.......((---..(((((((((((----.((.((((((((....))))))))...)))))))......----.)))))).---.)).......))))). ( -36.35)
>DroSim_CAF1 189581 104 + 1
AUAGCGGCU--CUAAGCGGUGAUAAUACU---UUAAGGGGCCCUG----GCAAUCACUGCAUAGAUGCAGUGAGAGUGCAGGGAAAUGC----UCCCUUUU---CAGCUACACAAUUGCA
...((((((--((....((((....))))---....))))))(((----(((.((((((((....))))))))...)))(((((.....----)))))...---)))..........)). ( -35.70)
>DroEre_CAF1 193416 104 + 1
AUAGCGGCU--CUAAGCGGUGAUAAUAUU---UUAAGGGGCUCUG----GCAAUCACUGCAUAAAUGCAGUGAGAGUGCAGGGAAAUGC----UCCCUUUU---CAGCUACACAAUUGCA
...(((((.--....)).(((........---..((((((((((.----(((.((((((((....))))))))...)))..)))...))----.)))))..---......)))...))). ( -32.07)
>DroYak_CAF1 187400 113 + 1
AUAGCGGCUCUCUAAGCGGUGAUAAUAUUUUUUUAAGGGGCUCUGGCUGGCAAUCACUGCAUAAAUGCAGUGAGAGUGGAGGGAAAUAC----UCCCUUUU---CAGCUACACAAUUGCA
...(((((((..((((..(.........)..))))..))))).((((((((..((((((((....))))))))..))(((((((.....----))))))).---)))))).......)). ( -37.60)
>DroAna_CAF1 183362 113 + 1
-AAGCAGCG--CUAAGCGGUGAUAAUAUUUUUUUAAAAGGCAGCU----GCAAUCACUGCAUAGAUGCGGAGAGAGCGCCGGGAAAGGCGGCCACCCUUUUACUUGGCCCUACAAUUGCA
-..((((((--(((.((((((((....((((....))))((....----)).)))))))).))).)))......((.(((((((((((.((...))))))).)))))).)).....))). ( -33.70)
>consensus
AUAGCGGCU__CUAAGCGGUGAUAAUACU___UUAAGGGGCCCUG____GCAAUCACUGCAUAGAUGCAGUGAGAGUGCAGGGAAAUGC____UCCCUUUU___CAGCUACACAAUUGCA
...............(((((..............(((((((((((....((..((((((((....))))))))..)).)))))...........))))))..............))))). (-25.79 = -26.24 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:27:02 2006