Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,073,793 – 3,073,903 |
Length | 110 |
Max. P | 0.642900 |
Location | 3,073,793 – 3,073,903 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 77.47 |
Mean single sequence MFE | -16.41 |
Consensus MFE | -13.18 |
Energy contribution | -12.93 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.21 |
Mean z-score | -0.89 |
Structure conservation index | 0.80 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.642900 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3073793 110 + 27905053 GAAGAUCUGGGCUCCAACUGUCCAGGACUCACUCGUGACGAACACUAGC----UCCAAUCAAUAAAAUAAAAUAAAAAAACUA-GCUUGAUUGCUUACACAUA-AUUUCAUAAAAU ((((.(((((((.......)))))))........(((..((........----))(((((((.....................-..)))))))....)))...-.))))....... ( -16.10) >DroSec_CAF1 60634 109 + 1 GAAGAUCUGGGCUCCAACUGUCCAGGACUCACUCGUGACGAACACUAGC----UCUAAUCAAUAUAAUAAAA-AAAAAAACUA-GCUUGAUUGCUUACACAUA-AUUUCACAAAAU ((((.(((((((.......)))))))........(((((((.((..(((----(..................-.........)-))))).))).)))).....-.))))....... ( -16.13) >DroSim_CAF1 62664 108 + 1 GAAGAUCUGGGCUCCAACUGUCCAGGACUCACUCGUGACGAACACUAGC----UCCGAUCAAUAAAAUAAAA-A-AAAAACUA-GCUUGAUUGCUUACACAUA-AUUUCACAAAAU ((((((((((((.......)))))(((....((.(((.....))).)).----)))))))............-.-.......(-((......)))........-..)))....... ( -17.80) >DroEre_CAF1 62079 104 + 1 GAAGAUCUGGGCUCUAACUGUCCAGGACUCACUCGUGACGAACACUAACUAGCUCCAGUCAAUA----------AAAAAUGUAU-CUUGAUUGCUUACACAUA-AUUUCAAAUAAU ((((.(((((((.......)))))))........(((..((.(........).))(((((((..----------..........-.)))))))....)))...-.))))....... ( -16.62) >DroYak_CAF1 62746 105 + 1 GAAGAUCUGGGCUCUAACUGUCCAGGACUCACUCGUGACGACCACUAACUAGCUGCAGAAAAUA----------AAAACGAUUUGCUUAAUUGCUUACACAUA-AUUUCAAAUAAU ((((.(((((((.......)))))))........(((.....))).....(((.(((((.....----------.......)))))......)))........-.))))....... ( -15.60) >DroAna_CAF1 76879 94 + 1 GAUGACCUGGACUCAAAUUGUCCGGGACUAACUCGUGAUGACCACUAAUU------------------AAAA--UAUGAACUA--CUUUAUAAAUUACACAUAAAUUUCACAAAAU .....(((((((.......)))))))........((((...........(------------------((..--((((((...--.))))))..)))..........))))..... ( -16.20) >consensus GAAGAUCUGGGCUCCAACUGUCCAGGACUCACUCGUGACGAACACUAAC____UCCAAUCAAUA____AAAA__AAAAAACUA_GCUUGAUUGCUUACACAUA_AUUUCACAAAAU ((((.(((((((.......)))))))........(((.....)))............................................................))))....... (-13.18 = -12.93 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:13 2006