Locus 9119

Sequence ID 3R_DroMel_CAF1
Location 24,349,216 – 24,349,331
Length 115
Max. P 0.911821
window14591

overview

Window 1

Location 24,349,216 – 24,349,331
Length 115
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 76.13
Mean single sequence MFE -29.68
Consensus MFE -18.04
Energy contribution -17.77
Covariance contribution -0.28
Combinations/Pair 1.26
Mean z-score -1.84
Structure conservation index 0.61
SVM decision value 1.08
SVM RNA-class probability 0.911821
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24349216 115 - 27905053
CUGUGUGUCCUUCAUAUACGCCGGCUGCUCCGGCAACCAGAACAACUUCCGAUCCUUCGAGGCAUGCACGAACCAAUGCCGACGUAAGCCCCACCUACAGC---CACUUAUGCACCAC
..((((((.......)))))).(((((....(((...............(((....))).(((((..........))))).......))).......))))---)............. ( -24.60)
>DroVir_CAF1 156669 117 - 1
UUGCGUGUCCUUUAUUUACUCGGGUUGCUCAGGCAACCAGAACAACUUCCGUUCCUUUGAAGCAUGCACAAAUCAAUGCGGAAGUAAGCCUGCCACAGAGCUGACACUUA-AUACCAA
....(((((..........((.((((((....)))))).))...((((((((....((((............)))).)))))))).((((((...))).))))))))...-....... ( -32.70)
>DroPse_CAF1 180743 113 - 1
CUGUGUGUCCUUCAUCUACUCGGGUUGCUCCGGCAAUCAGAACAACUUCCGUUCGUUUGAGGCAUGCACGAAUCUCUGCGGAAGUAAGCCUGCACACCAGC---UAA--AUGCACUCC
..((((((...........((.((((((....)))))).))...((((((((..(((((..(....).)))))....))))))))......))))))..((---...--..))..... ( -30.00)
>DroWil_CAF1 143847 112 - 1
UUGUGUAUCCUUUAUCUAUUCUGGUUGUUCAGGCAAUCAGAACAAUUUCCGCUCCUUUGAAGCAUGCACGAAUCAAUGCGGAAGUAAGCCUCUCCAAGAG------CUUCUACACCAA
..(((((...........((((((((((....))))))))))..((((((((....((((..(......)..)))).))))))))((((.((.....)))------))).)))))... ( -31.10)
>DroMoj_CAF1 133075 117 - 1
UUGCAUAUCCUUUAUUUACUCUGGUUGCUCUGGCAACCAGAACAACUUCCGUUCCUUUGAAGCAUGCACAAAUCAAUGCGGAAGUAAGCUUGCUCCACAAAUCACACUUU-AUACCAA
..(((..............(((((((((....)))))))))...((((((((....((((............)))).)))))))).....))).................-....... ( -29.50)
>DroAna_CAF1 173192 112 - 1
CUGUAUUUCCUUCAUCUACGCCGGUUGCUCGGGCAACCAGAACAACUUCCGGUCAUUCGAGGCAUGCACAAAUCUCUGCGGAAGUAAGCCUGCCUUCCGGC---CACCUCU---CUCU
...(((((((.........(((((((((....)))))).(((..((.....))..)))..)))..(((........)))))))))).(((........)))---.......---.... ( -30.20)
>consensus
CUGUGUGUCCUUCAUCUACUCCGGUUGCUCAGGCAACCAGAACAACUUCCGUUCCUUUGAAGCAUGCACAAAUCAAUGCGGAAGUAAGCCUGCCCAACAGC___CACUUAUACACCAA
.(((((((.((((.........((((((....)))))).(((....))).........)))).)))))))......(((....)))................................ (-18.04 = -17.77 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:59 2006