| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,331,285 – 24,331,435 |
| Length | 150 |
| Max. P | 0.998810 |
| Location | 24,331,285 – 24,331,385 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.29 |
| Mean single sequence MFE | -27.75 |
| Consensus MFE | -17.06 |
| Energy contribution | -17.62 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.61 |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.941474 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24331285 100 + 27905053 -----UGUUGUUACCUCAACAUGG---------------CUGUAAUACAUUGUAGUGUAAACUAAAAAUGAAUGUCCAUGAGAUUCGGGCAAUUUUUUAUUGUGUGAAUCCCUGCUGAUU -----(((((......))))).((---------------(.......((((.((((....))))..))))...........((((((.(((((.....))))).))))))...))).... ( -21.30) >DroSec_CAF1 153661 112 + 1 CCAUCAGUUGUUACCAUGUUGAGGUAAUAC--------CUUGUAAUGCCUUGUAGGGUAAACUAAAAAAGAAUGUCCAGGAGAUUCGGUCAAUAUUUUAUUGAGUGAAUCCCUGCUGAUU ..(((((...(((((....(((((((.(((--------...))).)))))))...)))))................((((.((((((.((((((...)))))).))))))))))))))). ( -34.30) >DroSim_CAF1 160858 112 + 1 CCAUCAGUUGUUACCAUGUUGAGGUAAUAC--------CUUGUAAUGCCUUGUAGGGUAAACUAAAAAAGAAUGUCCAUAAGAUUCGGUCAAUUUUUUAUUGAGUGAAUCCCUGCUGAUU ..((((((.((((((....(((((((.(((--------...))).)))))))...))))).....................((((((.(((((.....))))).)))))).).)))))). ( -29.20) >DroEre_CAF1 162881 118 + 1 CAAUCAGUUGUUAU-AUUCCUAGCUAACCCUCAACAUGACUCUAAUACUGGCUAGGGUAAACUAAAA-AGUAUUUCCAUGAGAUUCGGUCAAUUUUUUAUUGAGCGAAUCCCUGCAGAGU ......(((((((.-.....)))).))).(((..((((.....((((((...(((......)))...-))))))..)))).((((((.(((((.....))))).))))))......))). ( -26.20) >consensus CCAUCAGUUGUUACCAUGUCGAGGUAAUAC________CCUGUAAUACCUUGUAGGGUAAACUAAAAAAGAAUGUCCAUGAGAUUCGGUCAAUUUUUUAUUGAGUGAAUCCCUGCUGAUU .....((((((((((.......)))))).................(((((....)))))))))..................((((((.(((((.....))))).)))))).......... (-17.06 = -17.62 + 0.56)
| Location | 24,331,345 – 24,331,435 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 95.00 |
| Mean single sequence MFE | -25.82 |
| Consensus MFE | -24.00 |
| Energy contribution | -24.40 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.93 |
| SVM decision value | 3.24 |
| SVM RNA-class probability | 0.998810 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24331345 90 - 27905053 CGAGUGAUUACUCUGCGGAGCCGAAUGAAUGAGCUUGGCUUGGAUACGAAAAUCAGCAGGGAUUCACACAAUAAAAAAUUGCCCGAAUCU ((.((((...((((((.(((((((..........))))))).(((......))).))))))..)))).((((.....))))..))..... ( -22.70) >DroSec_CAF1 153733 90 - 1 CGAGUGAUUACUCUGCGGAGCCGAAUGAAUGAGCUUGGCUCGGAUACGAAAAUCAGCAGGGAUUCACUCAAUAAAAUAUUGACCGAAUCU .((((((...((((((.(((((((..........))))))).(((......))).))))))..))))))..................... ( -29.30) >DroSim_CAF1 160930 90 - 1 CGAGUGAUUACUCUGCGGAGCCGAAUGAAUGAGCUUUCCUUGGAUACGAAAAUCAGCAGGGAUUCACUCAAUAAAAAAUUGACCGAAUCU .((((((...(((((((((((((......)).))..)))...(((......))).))))))..))))))..................... ( -22.30) >DroEre_CAF1 162959 90 - 1 CGAGUGAUUACUCUGCGGAGCCGAAUGAAUGAGCUUGGCUUGGAUACGAAACUCUGCAGGGAUUCGCUCAAUAAAAAAUUGACCGAAUCU .((((((...((((((((((((((..........)))))(((....)))...)))))))))..))))))..................... ( -28.10) >DroYak_CAF1 159266 90 - 1 CGAGUGAUUACUCUGCGGAGCCGAAUGAAUGAGCUUGGCUUGGAUACGAAAAUCAGCAGGGAUUCGCUCAAUAAAAAAUUGUCCGAGUCU .((((((...((((((.(((((((..........))))))).(((......))).))))))..))))))..................... ( -26.70) >consensus CGAGUGAUUACUCUGCGGAGCCGAAUGAAUGAGCUUGGCUUGGAUACGAAAAUCAGCAGGGAUUCACUCAAUAAAAAAUUGACCGAAUCU .((((((...((((((.(((((((..........))))))).(((......))).))))))..))))))..................... (-24.00 = -24.40 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:55 2006