Locus 9113

Sequence ID 3R_DroMel_CAF1
Location 24,321,339 – 24,321,454
Length 115
Max. P 0.540957
window14583

overview

Window 3

Location 24,321,339 – 24,321,454
Length 115
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 80.23
Mean single sequence MFE -33.54
Consensus MFE -16.93
Energy contribution -16.44
Covariance contribution -0.50
Combinations/Pair 1.33
Mean z-score -2.12
Structure conservation index 0.50
SVM decision value 0.01
SVM RNA-class probability 0.540957
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24321339 115 + 27905053
UGGAAAAACAGGUGACGCUCAUCGAAAUCGAUGAGAAAUUUACAUUUUACUCGUCCAUUGUGGAAACACUGGCCAACACCCGCAAGUUCCAGGACAUCAAGUGUGUGCGCAUAAA
(((((.....((((...(((((((....))))))).................(.(((..(((....)))))).)..))))(....))))))(.((((.....)))).)....... ( -32.10)
>DroVir_CAF1 123314 115 + 1
UGGAACGCCAAGUGACACUGGUCGAAAUCGAUGAGAAAUUUACAUUUUACUCGACCAUUGUGGAGACCCUGCAGCAAAUGCGCCAGCAUCAUGACGUCAGAUGUGUGCGCAUAAA
......((..((.((((.(((((((....((((.........))))....))))))).)))(....))))...))..((((((..(((((.((....)))))))..))))))... ( -31.90)
>DroGri_CAF1 124849 115 + 1
UGGAGCGGCAAGUGACGCUCGUCGAAAUCGAUGAGAAAUUUACAUUCUACUCGACCAUUGUGAACAACUUGCAGCAAAUGCGCAAAUUCCAUAACGUGGGAUGCAUACGCAUAAA
....((.((((((....(((((((....)))))))...((((((..............))))))..)))))).))..(((((...(((((((...))))))).....)))))... ( -34.54)
>DroWil_CAF1 114752 115 + 1
UUGAACGCCAAGUGACGCUUAUCGAAAUCGAUGAGAAAUUUACAUUUUACUCGGCCAUUGUGGAAGAUAUGGCCAACAUGCGCAAGUAUCAGGAUGUGAAGUGUGUGCGCAUAAA
.....((((((((....(((((((....)))))))..))))(((((((((((((((((..........))))))...((((....))))...)).)))))))))).)))...... ( -35.50)
>DroMoj_CAF1 103943 115 + 1
UGGAGCGCCAGGUGACACUUGUCGAAAUCGAUGAGAAAUUUACAUUUUACUCGAGCAUUGUGGAAACCUUGGAUCAAAUGCGCAAGUACCAUGACGUCAGAUGUGUGCGCAUAAA
....((((((..((((.((..(((....)))..)).......(((..((((.(.(((((...((..(...)..)).))))).).))))..)))..))))..)).))))....... ( -31.40)
>DroPer_CAF1 152032 115 + 1
UGAUGCGACAAGUGACGCUUAUCGAAAUCGAUGAGAAAUUUACAUUUUACUCGGCCAUUGUUGAAACGAUGGGCAGCAUGAAGAAGUAUCACGACGUGAAGUGUGUGCGCAUAAA
..(((((((((((....(((((((....)))))))..))))((((((((((((.(((((((....))))))).)....(((.......))).)).))))))))))).)))))... ( -35.80)
>consensus
UGGAACGCCAAGUGACGCUUAUCGAAAUCGAUGAGAAAUUUACAUUUUACUCGACCAUUGUGGAAACCAUGGACAAAAUGCGCAAGUACCAUGACGUCAAAUGUGUGCGCAUAAA
...........(((...(((((((....))))))).....(((((((.(((((....(((((..................)))))......))).)).)))))))..)))..... (-16.93 = -16.44 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:51 2006