Locus 9111

Sequence ID 3R_DroMel_CAF1
Location 24,319,951 – 24,320,071
Length 120
Max. P 0.500000
window14580

overview

Window 0

Location 24,319,951 – 24,320,071
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.94
Mean single sequence MFE -39.92
Consensus MFE -17.17
Energy contribution -17.53
Covariance contribution 0.37
Combinations/Pair 1.50
Mean z-score -2.12
Structure conservation index 0.43
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24319951 120 + 27905053
GCUGCCCAUUUGGCGUGAACUCGUUGGGGAGAAAACACUUAUCGAAUAUGACAUGGAUUUUGUCGUCAAUCUGAAGCGCGAUGUCUUCGAUGUCCUGUUUGAAGCUCAGCAGUUUGAGCA
((((((.....)))..(((((.(((((((((......))).(((((((.(((((.((...(((((((........).))))))...)).))))).)))))))..))))))))))).))). ( -36.50)
>DroPse_CAF1 150600 120 + 1
GCUGCCCAUUUGGCGGGAGCUGGUGGGCGAGAAAGUGCUCAUCGAAUAUGAUGCGGAAUUUGUUGUCAAUUUGAAUCGCGAGAUUUUCGACGUCCUGUUCGAGGGGCAGCUGUUUGAGCA
((((((((.(..((....))..)))))).(((.(((((((.(((((((.((((((((((((((..((.....))...)))))..))))).)))).))))))).))))).)).))).))). ( -47.20)
>DroGri_CAF1 123387 120 + 1
GUUGCCAAUUUGGCGGGAGCUGGUUGACGAAAAGGUGCUGAUCGAGUAUGACAUGCAUUUUGUCGUUAAUUUGAAUCGUGAGAUCUUUGACACAAUGUUCGAGGGUCAGCUAUUUGAGCA
..((((((..((((((...(..((((((((.(((((((((.((......)))).))))))).))))))))..)..))....(((((((((........))))))))).)))).))).))) ( -36.60)
>DroWil_CAF1 113304 120 + 1
UCUGCCCACUUGGCGUGAGCUUGUGGGCGAUAGAGUUCUUAUUGAAUAUGACAUGCAUUUUGUGGUUAAUCUCAAUCGCGAAAUAUUCGAUGUAAUGUUCGAAGGACAAUUAUUUGAGCA
..(((((((..(((....))).))))))).....(((((..((((((((.(((((.(((((((((((......)))))))))))...).)))).)))))))))))))............. ( -40.70)
>DroAna_CAF1 143965 120 + 1
GCUUCCUAUUUGGCGGGAACUGGUGUCCGACAAAACUCUUAUCGAAUAUGAUAUGGACUUUAGCGUAAAUCUGCAACGCGAGGUUUUCGACACAUUGUUCGAGGCACAGCAGUUUGAGCA
((((((........))((((((.(((((((......))...(((((((((....(((((((.((((.........)))))))))))......)).))))))))).))).)))))))))). ( -31.30)
>DroPer_CAF1 150618 120 + 1
GCUGCCCAUUUGGCGGGAGCUGGUGGGCGAGAAAGUGCUCAUCGAAUAUGAUGCGGAAUUUGUUGUCAAUUUGAAUCGCGAGGUUUUCGACGUCCUGUUCGAGGGGCAGCUGUUUGAGCA
((((((((.(..((....))..)))))).(((.(((((((.(((((((.((((((((((((((..((.....))...)))))..))))).)))).))))))).))))).)).))).))). ( -47.20)
>consensus
GCUGCCCAUUUGGCGGGAGCUGGUGGGCGAGAAAGUGCUUAUCGAAUAUGACAUGGAUUUUGUCGUCAAUCUGAAUCGCGAGAUUUUCGACGUACUGUUCGAGGGACAGCUGUUUGAGCA
((((((((.(..((....))..)))))))............((((((((((((.......))))))...........((....(((((((........)))))))...)).)))))))). (-17.17 = -17.53 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:49 2006