Locus 9110

Sequence ID 3R_DroMel_CAF1
Location 24,318,208 – 24,318,325
Length 117
Max. P 0.995608
window14579

overview

Window 9

Location 24,318,208 – 24,318,325
Length 117
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 93.46
Mean single sequence MFE -32.92
Consensus MFE -28.14
Energy contribution -28.14
Covariance contribution 0.00
Combinations/Pair 1.06
Mean z-score -2.25
Structure conservation index 0.85
SVM decision value 2.59
SVM RNA-class probability 0.995608
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24318208 117 + 27905053
AGAUCUCGAAUGUGUUCGUCCAGAAGGUGAAGAGCAUCAUCAACUUUGAGAACAUAUUCAAGUGAGUAAAUUUGCAAAGUGCAGUG-CGCAACUUUUA-CUUGUGAACUAGAGAUGAGC
..(((((((((((((((....((..(((((......)))))..))....))))))))))..(..((((((.((((...........-.))))..))))-))..)......))))).... ( -33.10)
>DroSec_CAF1 140528 117 + 1
AGAUCUCGAAUGUGUUCGUCCAGAAGGUGAAGAGCAUCAUCAACUUUGAGAACAUAUUCAAGUGAGUAAAUUUGCAAAGUGCAGUG-CGCAACUUUCA-CUUGUGAACUAGAGAUGAGC
..(((((((((((((((....((..(((((......)))))..))....))))))))))(((((((((....)))...((((...)-))).....)))-)))........))))).... ( -34.00)
>DroSim_CAF1 149786 117 + 1
AGAUCUCGAAUGUGUUCGUCCAGAAGGUGAAGAGCAUCAUCAACUUUGAGAACAUAUUCAAGUGAGUAAAUUUGCAAAGUGCAGUG-CGCAACUUUCC-CUCGUGAACUAGAGAUGAGC
..(((((((((((((((....((..(((((......)))))..))....))))))))))((((..(((...((((.....))))))-)...))))...-...........))))).... ( -30.20)
>DroEre_CAF1 149799 119 + 1
AGAUCUCGAAUGUGUUCGUCCAGAAGGUGAAGAGCAUCAUCAACUUUGAGAACAUAUUCAAGUAAGUAGAUUUGCGUAGUGCAGUGGAGCAACUUUCACUUUGUGAACUAGAGAUGAAC
..(((((((((((((((....((..(((((......)))))..))....)))))))))).......(((.((..((.((((.(((......)))..)))).))..)))))))))).... ( -34.80)
>DroYak_CAF1 145994 117 + 1
AGAUCUCGAAUGUGUUCGUCCAGAAGGUGAAGAGUAUCAUCAACUUUGAGAACAUAUUCAAGUAAGUUAAUUUGCAUAGUGCUGUG-UGCAACUUUCA-UUUAUAAACUAGAGAUGAGC
..(((((((((((((((....((..(((((......)))))..))....))))))))))..((((((.((.(((((((......))-)))))..)).)-)))))......))))).... ( -32.50)
>consensus
AGAUCUCGAAUGUGUUCGUCCAGAAGGUGAAGAGCAUCAUCAACUUUGAGAACAUAUUCAAGUGAGUAAAUUUGCAAAGUGCAGUG_CGCAACUUUCA_CUUGUGAACUAGAGAUGAGC
..(((((((((((((((....((..(((((......)))))..))....))))))))))..(((((....)))))(((((((......)).)))))..............))))).... (-28.14 = -28.14 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:48 2006