Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,072,134 – 3,072,251 |
Length | 117 |
Max. P | 0.921389 |
Location | 3,072,134 – 3,072,251 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 73.32 |
Mean single sequence MFE | -36.93 |
Consensus MFE | -14.38 |
Energy contribution | -15.72 |
Covariance contribution | 1.34 |
Combinations/Pair | 1.38 |
Mean z-score | -2.29 |
Structure conservation index | 0.39 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.921389 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3072134 117 - 27905053 UGCCCUGCUCCAGGCUAACAAACGCAAGCGAAAGGCCAAGACGACCGGCGAGAAUGAUCCUGACCAAGGACAAUCCAUCGGCUUGGAAAGGGCCUAUGCCUCUGACACGAAAAAAGA .(((((..(((((((.......(....)(((...(((.........)))(.((.((.((((.....)))))).))).)))))))))).)))))........................ ( -33.90) >DroVir_CAF1 117030 111 - 1 GGCCCUGCUGCAGGCAAACAAACGCAAGCGAAAGGCAAAGGCAGUGCCAUUGGAGGAG------CAGCAGCAGUCUGUGAGUCUGGAAAUGGCCUAUGCUACAGCCAGCAAAAAAGA .....((((((..((........))..))....(((...((((..((((((...(((.------..((((....))))...)))...))))))...))))...)))))))....... ( -33.00) >DroPse_CAF1 59500 114 - 1 GGCGCUGCUCAAUGAAAACAAACGCAAAAGAAAGGCCAAGGCAGUCGAAGAUGUGGA---UGAUCAGCAGCAAUCUGUGGGCCUGGAAAUGGCCUACGCCACGGCCAGCAAAAAGGA (((((((((....((...((..((((...((...((....))..)).....))))..---)).)))))))).....(((((((.......))))))))))....((........)). ( -36.80) >DroGri_CAF1 73414 114 - 1 GGCGCUGCUGCAGGAAAACAAACGCAAGCGCAAAGCAAAAGCUGUUCCUUUGGAUGAUC---AGCAGCAGCAAUCGGUGGGUCUUGAAAUGGCCUACGCGACGGCCAGCAAAAAGGA ((((((((((((((((.......((....))..(((....))).))))).((......)---)))))))))..((((((((((.......))))))).)))..)))........... ( -42.80) >DroAna_CAF1 75388 117 - 1 GGCGCUGCUCCAGGCCAACAAACGCAAGCGGAAGGCUAAAGCGGCCGAAGAGGAUAACGAAGAGCAACUGCAGUCGGUGGGCUUAGAAAUGGAGUAUGCGUCAGCUACCAAAAAAGA ((((((((((((((((.((..((....((((...(((....((.((.....))....))...)))..)))).))..)).))))......))))))).)))))............... ( -38.30) >DroPer_CAF1 59494 114 - 1 GGCGCUGCUCAAUGAAAACAAACGCAAAAGAAAGGCCAAGGCAGUCGAAGAUGUGGA---UGAUCAGCAGCAAUCUGUGGGCCUGGAAAUGGCCUACGCCACCGCCAGCAAAAAGGA (((((((((....((...((..((((...((...((....))..)).....))))..---)).)))))))).....(((((((.......))))))))))....((........)). ( -36.80) >consensus GGCGCUGCUCCAGGAAAACAAACGCAAGCGAAAGGCCAAGGCAGUCGAAGAGGAGGA___UGAGCAGCAGCAAUCUGUGGGCCUGGAAAUGGCCUACGCCACAGCCAGCAAAAAAGA (((((((((.............((....))...(((.......)))...................)))))).....(((((((.......)))))))......)))........... (-14.38 = -15.72 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:12 2006