Locus 9108

Sequence ID 3R_DroMel_CAF1
Location 24,312,290 – 24,312,381
Length 91
Max. P 0.875080
window14575

overview

Window 5

Location 24,312,290 – 24,312,381
Length 91
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 76.66
Mean single sequence MFE -22.83
Consensus MFE -12.82
Energy contribution -12.98
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.95
Structure conservation index 0.56
SVM decision value 0.89
SVM RNA-class probability 0.875080
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24312290 91 - 27905053
UCCCAACCAAUCCCCUGC-CAA-GUUAUA-----GAGCUCACGCCGUUGCGUAAACAAAACACGCAGCCCUGACUUAAUGGCUAUGCACAUUAGCAAC
................((-(((-((((..-----(.((....)))(((((((.........)))))))..)))))...))))..(((......))).. ( -19.00)
>DroVir_CAF1 114362 74 - 1
----------------UG-CUG-CCUUCG-----GGGCGUACG-CGUUGCGUAAACAAAACACGCAGCGCUCACUUAAUGGCUAUGCACAUUAGCAAC
----------------((-(((-((....-----))(((((((-((((((((.........)))))))))...(.....)).)))))....))))).. ( -25.80)
>DroEre_CAF1 143928 89 - 1
--CCAACACAACCCCUGC-CAA-GUUAUA-----GAGCUCACGCCGUUGCGUAAACAAAACACGCAGCCCUGACUUAAUGGCUAUGCACAUUAGCAAC
--..............((-(((-((((..-----(.((....)))(((((((.........)))))))..)))))...))))..(((......))).. ( -19.00)
>DroYak_CAF1 139987 91 - 1
GUCCAACACAACCCCUGC-CAA-GUUAUA-----GAGCUCACGCCGUUGCGUAAACAAAACACGCAGCCCUGACUUAAUGGCUAUGCACAUUAGCAAC
................((-(((-((((..-----(.((....)))(((((((.........)))))))..)))))...))))..(((......))).. ( -19.00)
>DroAna_CAF1 135862 91 - 1
-UCCUUCACCACCCUUGCUCCC-GGCGUG-----GAGGGCACGGCGUUGCGUAAACAAAACACGCAGCACUGACUUAAUGGCUAUGCACAUUAGCAAC
-.(((((((...((........-)).)))-----))))((.(((.(((((((.........))))))).)))...(((((((...)).)))))))... ( -28.40)
>DroPer_CAF1 140259 92 - 1
-----CUCUGCCUCCUGC-CACUGUUGCACUGGGUGGCACACGCCGUUGCGUAAACAAAACACGCAGCUCCGACUUAAUGGCUAUGCACAUUAGCAAC
-----....(((...(((-((((.........)))))))..((..(((((((.........)))))))..)).......)))..(((......))).. ( -25.80)
>consensus
__CCAACACAACCCCUGC_CAA_GUUAUA_____GAGCUCACGCCGUUGCGUAAACAAAACACGCAGCCCUGACUUAAUGGCUAUGCACAUUAGCAAC
....................................((.......(((((((.........))))))).......(((((((...)).)))))))... (-12.82 = -12.98 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:44 2006