Locus 9106

Sequence ID 3R_DroMel_CAF1
Location 24,306,823 – 24,306,913
Length 90
Max. P 0.711461
window14571

overview

Window 1

Location 24,306,823 – 24,306,913
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 88.67
Mean single sequence MFE -21.94
Consensus MFE -18.10
Energy contribution -18.90
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.53
Structure conservation index 0.82
SVM decision value 0.38
SVM RNA-class probability 0.711461
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24306823 90 - 27905053
GUACCUUUUUAUGUAUAUGUGUCCUGAAAUACUGGCACCAUUCGCACAGUUAAACACGUCAAUAUGUUAUGACUGUUGUUUGUGAGUGAG
((((........))))..(((.((.........)))))((((((((((((((((((........)))).))))))).....))))))).. ( -18.90)
>DroSec_CAF1 130280 90 - 1
GUACCUUUUUAUGUAUAUAUGGCCUGAAAUACUGGCACCAUUCGCACAGUUAAACACGUCAAUAUGUUAUGACUGUUGUUUGUGAGUGGG
((((........)))).....(((.........))).(((((((((((((((((((........)))).))))))).....)))))))). ( -23.00)
>DroSim_CAF1 139565 90 - 1
GUACCUUUUUAUGUAUAUAUGGCCUGAAAUACUGGCACCAUUCGCACAGUUAAACACGUCAAUAUGUUAUGACUGUUGUUUGUGAGUGGG
((((........)))).....(((.........))).(((((((((((((((((((........)))).))))))).....)))))))). ( -23.00)
>DroEre_CAF1 138286 77 - 1
-------------UAUAUAUGACCAGUACCACUGGCACCAUUCGCACAGUUAAACACGUCAAUAUGUUAUGACUGUUGUUUGUGAGUGGG
-------------......((.((((.....))))))(((((((((((((((((((........)))).))))))).....)))))))). ( -24.50)
>DroYak_CAF1 134561 90 - 1
GUACAUUUAUACGUAUAUAUGGCCUGUACCACUGGCACCAUUCGCACAGUUAAACACGUCAAUAUGUUAUGACUGUUGUUUGUGACUGGG
((((........)))).....(((.(.....).))).(((.(((((((((((((((........)))).))))))).....)))).))). ( -20.30)
>consensus
GUACCUUUUUAUGUAUAUAUGGCCUGAAAUACUGGCACCAUUCGCACAGUUAAACACGUCAAUAUGUUAUGACUGUUGUUUGUGAGUGGG
.....................(((.........))).(((((((((((((((((((........)))).))))))).....)))))))). (-18.10 = -18.90 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:41 2006