| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,305,620 – 24,305,750 |
| Length | 130 |
| Max. P | 0.984124 |
| Location | 24,305,620 – 24,305,722 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 86.99 |
| Mean single sequence MFE | -15.73 |
| Consensus MFE | -10.98 |
| Energy contribution | -11.38 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.562167 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24305620 102 + 27905053 CCACUCUUUUCAUGCCAUUGGGGAAAUGCAUUUCCACCAACUGCUAACCAUCUCGGUUUUUUUUUUCGUU-GUAUUU-UUUGUAUUUUCUCGCCCCACACC-CGA ...................(((((((((((.......((((....((((.....)))).........)))-).....-..)))))))))))..........-... ( -15.96) >DroSec_CAF1 129097 100 + 1 CCACUCUUUUCAUGCCAUUGGGGAAAUGCAUUUCCACCAACUGCUAACCAUCUCGGUUUU--UUUUCGUU-GUAUUU-UUUGUAUUUUCUCGCCCCGCACC-CGA ............(((...((((((((((((.......((((....((((.....))))..--.....)))-).....-..))))))))))))....)))..-... ( -19.24) >DroSim_CAF1 138400 101 + 1 CCACUCUUUUCAUGCCAUUGGGGAAAUGCAUUUCCACCAACUGCUAACCAUCUCGGUUUU--UUUUCGUU-GUAUUUUUUUGUAUUUUCUCGCCCCACACC-CGA ...................(((((((((((.......((((....((((.....))))..--.....)))-)........)))))))))))..........-... ( -16.56) >DroEre_CAF1 137112 87 + 1 CCACUCCUUUAAUGCCAUUGGGGAAAUGCAUUUCCACCAACUGCUAACCAUUUUGGGUUUUUUU------------------UAUUUUCUCGCCCCACACCCCAA .............((..(((((((((....))))).))))..))..........((((......------------------.........)))).......... ( -13.86) >DroYak_CAF1 133383 103 + 1 CCACUCUUUUCAUACCAUUGGGGAAAUGCAUUUCCACCAACUGCUAACCAUUUUGGUUUUUUUUUUUGUUUUUAUUU-UUUGUAUUUUCACGCCCCACACC-CGA ..................((((((((((((........(((....((((.....)))).........))).......-..))))))).....)))))....-... ( -13.05) >consensus CCACUCUUUUCAUGCCAUUGGGGAAAUGCAUUUCCACCAACUGCUAACCAUCUCGGUUUUUUUUUUCGUU_GUAUUU_UUUGUAUUUUCUCGCCCCACACC_CGA .............((..(((((((((....))))).))))..)).((((.....))))............................................... (-10.98 = -11.38 + 0.40)
| Location | 24,305,651 – 24,305,750 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 87.80 |
| Mean single sequence MFE | -21.77 |
| Consensus MFE | -19.16 |
| Energy contribution | -19.04 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.88 |
| SVM decision value | 1.96 |
| SVM RNA-class probability | 0.984124 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24305651 99 - 27905053 UCAGCUGCAAUUUCAUAUGCAAAUGGCUUCG-GGUGUGGGGCGAGAAAAUACAAA-AAAUAC-AACGAAAAAAAAAACCGAGAUGGUUAGCAGUUGGUGGAA ((((((((..((((...(((..(((.(....-).)))...))).)))).......-......-............((((.....)))).))))))))..... ( -20.80) >DroSec_CAF1 129128 97 - 1 UCAGCUGCAAUUUCAUAUGCAAAUGGCUUCG-GGUGCGGGGCGAGAAAAUACAAA-AAAUAC-AACGAAAA--AAAACCGAGAUGGUUAGCAGUUGGUGGAA ((((((((..((((.(((....)))((((((-....)))))))))).........-......-........--..((((.....)))).))))))))..... ( -22.30) >DroSim_CAF1 138431 98 - 1 UCAGCUGCAAUUUCAUAUGCAAAUGGCUUCG-GGUGUGGGGCGAGAAAAUACAAAAAAAUAC-AACGAAAA--AAAACCGAGAUGGUUAGCAGUUGGUGGAA ((((((((..((((...(((..(((.(....-).)))...))).))))..............-........--..((((.....)))).))))))))..... ( -20.80) >DroEre_CAF1 137143 84 - 1 UCAGCUGCAAUUUCAUAUGCAAAUGGCUUUGGGGUGUGGGGCGAGAAAAUA------------------AAAAAAACCCAAAAUGGUUAGCAGUUGGUGGAA ((((((((.((..((...((.....))..))..)).((((...........------------------.......)))).........))))))))..... ( -21.27) >DroYak_CAF1 133414 100 - 1 UCAGCUGCAAUUUCAUAUGCAAAUGGCUUCG-GGUGUGGGGCGUGAAAAUACAAA-AAAUAAAAACAAAAAAAAAAACCAAAAUGGUUAGCAGUUGGUGGAA ((((((((..((((((..((..(((.(....-).)))...)))))))).......-...................((((.....)))).))))))))..... ( -23.70) >consensus UCAGCUGCAAUUUCAUAUGCAAAUGGCUUCG_GGUGUGGGGCGAGAAAAUACAAA_AAAUAC_AACGAAAAAAAAAACCGAGAUGGUUAGCAGUUGGUGGAA ((((((((..((((.(((....)))((((((.....))))))..))))...........................((((.....)))).))))))))..... (-19.16 = -19.04 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:40 2006