Locus 9104

Sequence ID 3R_DroMel_CAF1
Location 24,304,634 – 24,304,726
Length 92
Max. P 0.999821
window14568

overview

Window 8

Location 24,304,634 – 24,304,726
Length 92
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 91.55
Mean single sequence MFE -28.58
Consensus MFE -25.52
Energy contribution -25.36
Covariance contribution -0.16
Combinations/Pair 1.19
Mean z-score -2.79
Structure conservation index 0.89
SVM decision value 4.16
SVM RNA-class probability 0.999821
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24304634 92 + 27905053
UCCC---ACUUUUUCAGCCGUUCUCUUGCCUUCUGCCACAUAUCUUUUGCGGAAAGGAGCAAGACGACUUUUGCACCAUGGAUACAUGGAGGAAA
(((.---.........((.(((.((((((.((((.((.((.......)).))..)))))))))).)))....)).(((((....))))).))).. ( -25.80)
>DroSec_CAF1 128163 92 + 1
UCCC---ACUUUUUCAGCCGUUCUCUUGCCUUCUGCCACAUAUCUUUGGCAGAAAGGAGCAAGUCGACUUCUGCACCAUGUAUACAUGGAGGAAA
(((.---.......(((..(((..((((((((((((((........)))))))..)).)))))..)))..)))..(((((....))))).))).. ( -31.10)
>DroSim_CAF1 137466 92 + 1
UCCC---ACUUUUUCAGCCGUUCUCUUGCCUUCUGCCACAUAUCUUUGGCGGAAAGGAGCAAGUCGACUUCUGCACUAUGGAUACAUGGAGGAAA
(((.---.......(((..(((..((((((((((((((........)))))))..)).)))))..)))..)))..(((((....))))).))).. ( -28.60)
>DroEre_CAF1 136050 93 + 1
UCCCA--AUUUUUUCAGCUGUUCCCUUGCCUUCUGCUACAUAUCUUUGGCGGAAAGGAGCAAGUCGACUUCUGCACCAUGGCUACAUGGAGGAAA
(((..--.......(((..(((..((((((((((((((........)))))))..)).)))))..)))..)))..(((((....))))).))).. ( -29.70)
>DroYak_CAF1 132316 95 + 1
UUCCCAUAUUUUUUCAGCCGUUCUCUUGCCUUCUGCCACAUAUCUUUGGCGGAAAGAAGCAAGUCGACUUCUGCAGCACGGCUACAUGGAGGAAA
........(((((((((((((....((((.((((((((........))))))))(((((........))))))))).)))))....)))))))). ( -27.70)
>consensus
UCCC___ACUUUUUCAGCCGUUCUCUUGCCUUCUGCCACAUAUCUUUGGCGGAAAGGAGCAAGUCGACUUCUGCACCAUGGAUACAUGGAGGAAA
(((...........(((..(((..(((((.((((((((........))))))))....)))))..)))..)))..(((((....))))).))).. (-25.52 = -25.36 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:38 2006