Locus 9103

Sequence ID 3R_DroMel_CAF1
Location 24,293,594 – 24,293,709
Length 115
Max. P 0.851015
window14567

overview

Window 7

Location 24,293,594 – 24,293,709
Length 115
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 79.36
Mean single sequence MFE -34.01
Consensus MFE -23.01
Energy contribution -24.82
Covariance contribution 1.81
Combinations/Pair 1.23
Mean z-score -1.77
Structure conservation index 0.68
SVM decision value 0.79
SVM RNA-class probability 0.851015
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24293594 115 - 27905053
GUUUUUGGGGCGCAAAUUUCUGGGAUCUCCGCGGCUGGAAAAGCGGGUGAAUGCCGAGGAAAAGUGUGUCCACAAGCCGAUGGCAGAGAAAGGGAGACAGCAACAGAGAAAGGAA
.(((((((((((((..(((((.((.(((((((..........))))).))...)).)))))...)))))))....(((...)))........(....).....))))))...... ( -34.80)
>DroSec_CAF1 117269 115 - 1
GUUUUUGGGGUGCAAAUUUCUGGGAUCUCCGCGGCUGGAAAAGCGGGUGAGUGCCGAGGAAAAGUGUGUCCACAAGCCGAUGGCAGAGAAAGGGAGACAGCAACAGAGAAAGGAA
.(((((((((..((..(((((.((.(((((((..........))))).))...)).)))))...))..)))....(((...)))........(....).....))))))...... ( -33.00)
>DroSim_CAF1 126478 115 - 1
GUUUUUGGGGCGCAAAUUUCUGGGAUCUCCGCGGCUGGAAAGGCGGGUGAGUGCCGAGGAAAAGUGUGUCCACACGCCGAUGGCAGAGAAAGGGAGACAGCAACGGAGAAAGGAA
.(((((((((((((..(((((.((..((((.((.((....)).)).).)))..)).)))))...)))))))....(((...)))........(....).....))))))...... ( -38.10)
>DroEre_CAF1 124911 115 - 1
GUUUUUGGGGCGCAAAUUUCUGGGAUCUCCGCGGCUGGAAAAGCGGGUGAAUGCCGAGGAAAAGUGUGUCCACAAGCCAAUGGCAGAGGAAGAGGGACAGCAAGAUAGAAGGGAA
((((((.(((((((..(((((.((.(((((((..........))))).))...)).)))))...)))))))....(((...)))........))))))................. ( -32.90)
>DroYak_CAF1 121161 115 - 1
GUUUUCGGGGCGCAAAUUUCUGGGCUCUCCGCGGCUGGAAAAGCGGGUGAAUGCCGAGGAAAAGUGUGUCCACAAGCCAAUGGCAGAGAAAGAGAGACGGCUAGAGAGAAAGGAA
.(((((.(((((((..(((((.((((((((((..........))))).))..))).)))))...)))))))...((((....................))))...)))))..... ( -36.15)
>DroAna_CAF1 113475 87 - 1
GUUUUCGGGGCGAGAAUUUUCGGGAA----GCGCCCCGA--ACUGAGUGAAAAACCGGGA-------------AAGCCAGUGGCAGAGGCAGGGAGAGGCCUUUUG---------
...(((((((((....(((....)))----.))))))))--)(((.((.....)))))..-------------..(((...)))((((((........))))))..--------- ( -29.10)
>consensus
GUUUUUGGGGCGCAAAUUUCUGGGAUCUCCGCGGCUGGAAAAGCGGGUGAAUGCCGAGGAAAAGUGUGUCCACAAGCCAAUGGCAGAGAAAGGGAGACAGCAACAGAGAAAGGAA
((((((.(((((((..(((((.((.(((((((..........))))).))...)).)))))...)))))))....(((...)))........))))))................. (-23.01 = -24.82 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:38 2006