Locus 9102

Sequence ID 3R_DroMel_CAF1
Location 24,289,582 – 24,289,673
Length 91
Max. P 0.932690
window14566

overview

Window 6

Location 24,289,582 – 24,289,673
Length 91
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 85.55
Mean single sequence MFE -30.07
Consensus MFE -24.41
Energy contribution -24.87
Covariance contribution 0.46
Combinations/Pair 1.14
Mean z-score -3.04
Structure conservation index 0.81
SVM decision value 1.22
SVM RNA-class probability 0.932690
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24289582 91 + 27905053
UACGGAGGAUAUUGUCGUCGGCGGCAUGCUUAAUUAUUAUAAUUACUUGCACUUUGUCUUGCCGUCGACGCCGUCGCUCCAGCAGU------------CUUCU
...(((((((...(.((((((((((((((.((((((...))))))...)))........))))))))))).)...((....)).))------------))))) ( -30.50)
>DroSec_CAF1 112281 91 + 1
UACGGAGGAUAUUGUCGUCGGCGGCAUGCUUAAUUAUUAUAAUUACUUGCACUUUGUCUUGCCGUCGACGCCGUCGCUCCAGCAGU------------CUUCU
...(((((((...(.((((((((((((((.((((((...))))))...)))........))))))))))).)...((....)).))------------))))) ( -30.50)
>DroSim_CAF1 118025 91 + 1
UACGGAGGAUAUUGUCGUCGGCGGCAUGCUUAAUUAUUAUAAUUACUUGCACUUUGUCUUGCCGUCGACGCCGUCGCUCCAGCAGU------------CUUCU
...(((((((...(.((((((((((((((.((((((...))))))...)))........))))))))))).)...((....)).))------------))))) ( -30.50)
>DroEre_CAF1 120875 93 + 1
UACGAAGGAUAUUGUCGUCGGCGGCAUGCUUAAUUAUUAUAAUUACUUGCACUUUGUCUUGCCGUCGACGCCGUCGCUCUGGCAGCC----------UCUUCU
...(((((........(((((((((((((.((((((...))))))...)))........))))))))))((((......))))....----------))))). ( -29.80)
>DroYak_CAF1 117067 103 + 1
UACGGAGGAUAUUGUCGUCGGCGGCAUGCUUAAUUAUUAUAAUUACUUGCACUUUGUCUUGCCGUCGACGUCGUCGCUCUGGCAGUCAGUCUCCUUCGCUUCU
..(((((((.((((.((((((((((((((.((((((...))))))...)))........))))))))))((((......)))).).)))).)))))))..... ( -37.20)
>DroAna_CAF1 109358 75 + 1
UACG---GAUAUUGUCGUCGGCGGCAUGCUUAAUUAUUAUAAUUGCUUGCACUUUGUUCUGCCGUCGUCACCGUGUCU-------------------------
...(---(((((.((.(.(((((((((((.((((((...))))))...)))........)))))))).))).))))))------------------------- ( -21.90)
>consensus
UACGGAGGAUAUUGUCGUCGGCGGCAUGCUUAAUUAUUAUAAUUACUUGCACUUUGUCUUGCCGUCGACGCCGUCGCUCCAGCAGU____________CUUCU
...(((((((..(((((.(((((((((((.((((((...))))))...)))...))))..)))).)))))..))).))))....................... (-24.41 = -24.87 +   0.46)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:37 2006