Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 24,288,474 – 24,288,593 |
Length | 119 |
Max. P | 0.835456 |
Location | 24,288,474 – 24,288,593 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.11 |
Mean single sequence MFE | -27.64 |
Consensus MFE | -21.85 |
Energy contribution | -21.20 |
Covariance contribution | -0.65 |
Combinations/Pair | 1.22 |
Mean z-score | -2.34 |
Structure conservation index | 0.79 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.835456 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24288474 119 + 27905053 UUAAAACAUUUUAAUAUAUUUUCAUUCGCUCUGAGCCGGCACUUAAUCAAGUGCUCGGUUUGAUUAACAAAUUGUGUUUCCCGCGAUCUCGAAAUAUACAUUUAGGUCCGAACUUU-UAC ..............((((((((...((((...((((((((((((....)))))).))))))((...((.....))...))..))))....))))))))..................-... ( -25.30) >DroEre_CAF1 119638 120 + 1 UUAAAAUAUUUCAAUAUAUUUCCGUUCGCCCUGUACCGACACUUAAUCAAGUGCUCGGUUUGAUUAACAAAUUGGGUUGCCCGCGGUCACGAAAUAUUUAUUCAAGUCCGAAAUUUAUUC ...(((((((((.........((((..((((...((((((((((....))))).)))))(((.....)))...)))).....))))....)))))))))..................... ( -23.72) >DroYak_CAF1 115851 120 + 1 UUAAAAUAUUUCAAUAUAUUUCCAUUUGCCCCGAACCGGCACUUAAUCAAGUGCUCGGUUUGAUUAACAAAUAGGGCUGCCCGCGGUCAGGAAAUAUUCAUUUAAGACCGAAAUUUAUUC .......(((((...(((((((((((((...(((((((((((((....)))))).))))))).....)))))..(((((....))))).))))))))((......))..)))))...... ( -33.90) >consensus UUAAAAUAUUUCAAUAUAUUUCCAUUCGCCCUGAACCGGCACUUAAUCAAGUGCUCGGUUUGAUUAACAAAUUGGGUUGCCCGCGGUCACGAAAUAUUCAUUUAAGUCCGAAAUUUAUUC ...............(((((((...((((..(((((((((((((....))))).))))))))...........(((...)))))))....)))))))....................... (-21.85 = -21.20 + -0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:34 2006