Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,070,822 – 3,070,919 |
Length | 97 |
Max. P | 0.792757 |
Location | 3,070,822 – 3,070,919 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 81.44 |
Mean single sequence MFE | -21.67 |
Consensus MFE | -13.91 |
Energy contribution | -15.28 |
Covariance contribution | 1.37 |
Combinations/Pair | 1.34 |
Mean z-score | -2.19 |
Structure conservation index | 0.64 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.792757 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3070822 97 - 27905053 UGUAAAUCUCUUUCCUGGAAUUUUAAAUAUAGAGGAUGAUUUUUAGGUUUGCGCACGUCAUUAAUUUGGACUUCUUCUCCGAUCUAAUCGAUGUGCU .((((((((...((((................))))........))))))))(((((((((((..(((((.......)))))..)))).))))))). ( -24.89) >DroVir_CAF1 115719 97 - 1 AAUUGACAUCCCGAUUAGAGAAUAUAACUUAUAUAUUGACUUACAGAUUCGCUCAUGUUAUCAAUCUGGAGUUCUUUUCCGAUCUCAUAGAUGUGCU .....(((((..(((..(((((...(((((....(((((...(((((.....)).)))..)))))...))))).)))))..))).....)))))... ( -16.90) >DroSec_CAF1 57653 95 - 1 UGUUAAUCUC--UCAUGGAAUUUUUAAUAUAGAGUAUGAUUUUUAGAUUUGCGCACGUCAUUAAUUUAGACUUCUUCUCCGAUCUAAUCGAUGUGCU .((.(((((.--((((...(((((......))))))))).....))))).))(((((((((((..(..((.......))..)..)))).))))))). ( -16.40) >DroSim_CAF1 59692 97 - 1 UGUAAAUCUCUUUCAUGGAACUUUUAAUAUAGAGUAUGAUUUUUAGAUUUGCGCACGUCAUUAAUUUGGACUUCUUCUCCGAUCUAAUCGAUGUGCU .((((((((...((((...(((((......))))))))).....))))))))(((((((((((..(((((.......)))))..)))).))))))). ( -28.80) >DroEre_CAF1 59106 97 - 1 UGUAAAUUUCUUUUUUGGAACUUUUAAUAUAGAGUAUGGUUUUUAGAUUUGCGCACGUCAUUAAUUUGGACUUUUUCUCCGAUCUGAUCGACGUGCU .((((((((((.....)))(((((......)))))..........)))))))(((((((((((..(((((.......)))))..)))).))))))). ( -26.10) >DroYak_CAF1 59763 97 - 1 UGUAAAUAUCUUUCUUGGAAUAUUUAAAAUAGAGUAUGGUUUUUAGAUUUGCACACGUCAUUAAUUUGGACUUUUUCUCUGAUCUGAUCGAUGUGCU (((((((.(((.....)))((((((......)))))).........)))))))((((((((((..(..((.......))..)..)))).)))))).. ( -16.90) >consensus UGUAAAUCUCUUUCUUGGAAUUUUUAAUAUAGAGUAUGAUUUUUAGAUUUGCGCACGUCAUUAAUUUGGACUUCUUCUCCGAUCUAAUCGAUGUGCU .((((((((..........(((((......))))).........))))))))(((((((((((..(((((.......)))))..)))).))))))). (-13.91 = -15.28 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:11 2006