Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 567,988 – 568,081 |
Length | 93 |
Max. P | 0.572011 |
Location | 567,988 – 568,081 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 78.89 |
Mean single sequence MFE | -24.85 |
Consensus MFE | -14.17 |
Energy contribution | -15.37 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.25 |
Mean z-score | -1.67 |
Structure conservation index | 0.57 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.572011 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 567988 93 + 27905053 CUUCAUCACGGCUACUUCAUCUGCCCUCAUGGAGAUAUCCACAUCCAUAACUUCAUCAGCCCCGGU---------GUCUUCGGUAGCCUCCACCGCUGGAGA .........(((((((.((((.(..((.((((((.(((........))).)))))).))..).)))---------).....)))))))((((....)))).. ( -22.60) >DroPse_CAF1 5622 102 + 1 CUUGAACGUAGUGGCCUCUUCAACCUGCACAGAGACGUCCACGUCCAUGGCCUCGUAAUCCUCGCUGCCCAUGCUCUCUUCGGUGGCCUCCACUGCCGGCGA .(((...(((((((............((.((..((((....))))..))))............((..((.(........).))..))..)))))))...))) ( -25.50) >DroSec_CAF1 7022 93 + 1 AUUCAUCACGGCUACUUCAUCUGCCCUCAUGGAGAUAUCUACAUCCAUGACUUCAUCAGCCCCGGU---------AUCUUCGGUGGCCUCCACCGCUGGAGA .........(((..........))).(((((((..........)))))))........(((((((.---------....)))).)))(((((....))))). ( -27.20) >DroSim_CAF1 7049 93 + 1 CUUCAUCACGGCUACUUCAUCUGCCCUCAUGGAGAUAUCUACAUCCAUGACUUCAUCAGCCCCGGU---------AUCUUCGGUGGCCUCCACCGCUGGAGA .........(((..........))).(((((((..........)))))))........(((((((.---------....)))).)))(((((....))))). ( -27.20) >DroEre_CAF1 6473 93 + 1 CUUCAUGGCGGCUACAUCAUCUCCCUUCAUAGAGAUAUCUACAUCCUUGAAGUCAUCAGCCCCGGU---------AUUUUCAGUGGCCUCCAAUGCUGGAGA ((((((((.((((((...(((((........)))))...........(((((..(((......)))---------..))))))))))).)))....))))). ( -25.90) >DroYak_CAF1 7210 93 + 1 CUUCAAUACGGCUACAUCAUAUGCCCUCAUGGAGACAUCUACAUCCAUAACGUCAUCAGCCCCGGU---------AUCUUCGGUGGCCCCCACUGCUGGAGA (((((....(((..........)))...(((((..........)))))..........(((((((.---------....)))).))).........))))). ( -20.70) >consensus CUUCAUCACGGCUACUUCAUCUGCCCUCAUGGAGAUAUCUACAUCCAUGACUUCAUCAGCCCCGGU_________AUCUUCGGUGGCCUCCACCGCUGGAGA .........(((..........))).(((((((..........)))))))..........................((((((((((......)))))))))) (-14.17 = -15.37 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:48 2006