| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,281,707 – 24,281,808 |
| Length | 101 |
| Max. P | 0.908358 |
| Location | 24,281,707 – 24,281,808 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.92 |
| Mean single sequence MFE | -26.73 |
| Consensus MFE | -19.13 |
| Energy contribution | -18.72 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.72 |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.908358 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24281707 101 - 27905053 CAAUUUAGUUAAACGUAAAUAAUUAAUUACCUGCCGUUGCCUGAGUUAUGAAAUGCGCAAUUAGGCGCGUUUAAUAUUUAAUUAAGGGCCAAACGGCA------------------G-AG ....(((((((........)))))))....((((((((((((.(((((..((((((((......))))))))......)))))..))))..)))))))------------------)-.. ( -31.60) >DroVir_CAF1 81699 100 - 1 CAAUUUAGUUUAACUUAAAUAAUUAAUUACUUGCCGUUGCCUGAGUUAUGAAAUGCGCAAUUAGGCGUAUUUAAUAUUUAAUUAAGGGCUUAU-AGCG------------------A-UC ..((((((......))))))..........((((..(.((((.(((((..((((((((......))))))))......)))))..))))..).-.)))------------------)-.. ( -19.10) >DroGri_CAF1 85760 100 - 1 CGAUUUAGUUUAACUUAAAUAAUUAAUUACUUGCUGUUGCCUGAGUUAUGAAAUGCGCAAUUAGGCGUAUUUAAUAUUUAAUUAAGGGCUUAC-AGCA------------------A-UC ..((((((......))))))..........(((((((.((((.(((((..((((((((......))))))))......)))))..))))..))-))))------------------)-.. ( -25.40) >DroWil_CAF1 69990 119 - 1 CAAUUUAGUUGAAUAUAAAUAAUUAAUUACUUGCCGUUGCCUGAGUUAUGAAAUGCGCAAUUAGGCGCAUUUAAUAUUUAAUUAAGGGCUAACAGGAA-CAACAUCGACAACGGCAGCAG .....(((((((.((....)).))))))).((((((((((((.(((((..((((((((......))))))))......))))).)))........((.-.....))..)))))))))... ( -29.10) >DroAna_CAF1 101576 114 - 1 CAAUUUGGUUGAACGUUAAUAAUUAAUUACCUGCCGUUGCCUGAGUUAUGAAAUGCGCAAUUAGGCGCAUUUAAUAUUUAAUUAAGGGCUA-ACGGCACCGACAUCAGCGGC----G-AG .......(((((..(.((((.....)))).)(((((((((((.(((((..((((((((......))))))))......)))))..)))).)-))))))......)))))...----.-.. ( -32.70) >DroPer_CAF1 108124 99 - 1 CAAUUUAGUUGAACAUAAAUAAUUAAUUACGUUGCGUUGCCUGAGUUAUGAAAUGCGCAAUUAGGCGCGUUUAAUAUUUAAUUAAGGGCUAACAGGGA------------------G--- ((((.(((((((..........))))))).)))).(((((((.(((((..((((((((......))))))))......)))))..)))).))).....------------------.--- ( -22.50) >consensus CAAUUUAGUUGAACAUAAAUAAUUAAUUACUUGCCGUUGCCUGAGUUAUGAAAUGCGCAAUUAGGCGCAUUUAAUAUUUAAUUAAGGGCUAAC_GGCA__________________G_AG ....(((((((........))))))).....((((...((((.(((((..((((((((......))))))))......)))))..)))).....))))...................... (-19.13 = -18.72 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:33 2006