Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 24,280,409 – 24,280,507 |
Length | 98 |
Max. P | 0.749521 |
Location | 24,280,409 – 24,280,507 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 85.57 |
Mean single sequence MFE | -24.80 |
Consensus MFE | -15.58 |
Energy contribution | -16.77 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.17 |
Mean z-score | -2.27 |
Structure conservation index | 0.63 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.749521 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24280409 98 - 27905053 GGGUUGCAACAGUAUGGGUGGAGCAGCUUUCCUUUGUGGAAA-----GGGGCAGAGGGGAAGUGACGAAAGCACCAACGAUGGCAAUGAAGUGAAAAGAAAAU ..(((((....((...((((.....((((((((((((.....-----...))))).)))))))..(....))))).))....)))))................ ( -24.80) >DroSec_CAF1 103155 103 - 1 GGGUUGCAACAGUAUGGGAGGAGCAGCUUUCCUUUGUGGAAAGGGAAGGGGCAGAAGGGAAGUGACGAAAGCACCAGCGAUGGCAAUGAAGUGAAAAGAAAAU ..(((((....((.(((.....((..(((((((((....)))))))))..))..........((.(....))))))))....)))))................ ( -25.10) >DroSim_CAF1 108026 98 - 1 GGGUUGCAACAGUAUGGGUGGAGCAGCUUUCCUUUGUGGAAA-----GGGGCAAAAGGGAAGUGACGAAAGCACCAACGAUGGCAAUGAAAUGAAAAGAAAAU ..(((((....((...((((.....((((((((((((.....-----...)).))))))))))..(....))))).))....)))))................ ( -24.70) >DroEre_CAF1 111555 98 - 1 GGGUUGCAACCGCGUGGGUGGAGCUUCGCUCAAUUGGCGAGG-----GGACUACAGAGGAAGUGACGAAAGCAGCAACGAUGGCAAUGAAGUGAAAAGAAAAU ..(((((..((((....)))).(((((((((..(((...((.-----...)).)))..).)))))....))).)))))......................... ( -24.60) >consensus GGGUUGCAACAGUAUGGGUGGAGCAGCUUUCCUUUGUGGAAA_____GGGGCAGAAGGGAAGUGACGAAAGCACCAACGAUGGCAAUGAAGUGAAAAGAAAAU ..(((((....((...((((.....((((((((((((.............))).)))))))))..(....))))).))....)))))................ (-15.58 = -16.77 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:32 2006