| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,278,860 – 24,278,955 |
| Length | 95 |
| Max. P | 0.609157 |
| Location | 24,278,860 – 24,278,955 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 83.38 |
| Mean single sequence MFE | -22.07 |
| Consensus MFE | -13.30 |
| Energy contribution | -14.22 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.609157 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24278860 95 + 27905053 AUUC-G-U------------UUCCAGUUUC--CUUUUCACUUC--UUUUGCCUUCCGGCGAAACUUUUAAUGGCACAUUAUUUCGUGCUAUAAAUUAUGAGUAAGGCCGCGCU ....-.-.------------.....((..(--(((((((....--(((((((....)))))))......(((((((........)))))))......)))).))))..))... ( -22.50) >DroVir_CAF1 78537 95 + 1 UUUCCGCU------------UUCCACUUUCCACUUUCCACUUUC-CUUUGGCU----CGCAAAGUUUUAAUGGCGCAUUAUUUCUUGCUAUAAAUUAUAACAAAGGCGGCGC- ...(((((------------((..............(((.....-(((((...----..)))))......))).(((........)))..............)))))))...- ( -14.90) >DroSec_CAF1 101617 95 + 1 AUUC-G-U------------UUCCAGUUUC--CUUUUCACUUC--UUUUGCCUUCCGGCGAAACUUUUAAUGGCACAUUAUUUCGUGCUAUAAAUUAUGAGUAAGGCAGCGCC ....-.-.------------.....(((.(--(((((((....--(((((((....)))))))......(((((((........)))))))......)))).)))).)))... ( -23.90) >DroSim_CAF1 106488 95 + 1 AUUC-G-U------------UUCCAGUUUC--CUUUUCACUUC--UUUUGCCUUCCGGCGAAACUUUUAAUGGCACAUUAUUUCGUGCUAUAAAUUAUGAGUAAGGCAGCGCC ....-.-.------------.....(((.(--(((((((....--(((((((....)))))))......(((((((........)))))))......)))).)))).)))... ( -23.90) >DroEre_CAF1 109483 103 + 1 AUUC-G-UUUU------CGUUUUCAGUUUC--CUUUUCAUUUUUUUUUUGCCUUCCGGCGAAACUUUUAAUGGCACAUUAUUUCGUGCUAUAAAUUAUGAGUAAGGCCACGCC ....-.-....------........((..(--((((((((..((((((((((....)))))))......(((((((........))))))))))..))))).))))..))... ( -23.90) >DroYak_CAF1 106011 108 + 1 AUUC-G-UUUUCGUUUUCGUUUUCAGUUUC--CUUUUCAUUUUU-UUUUGCCUUCCGGCGAAACUUUUAAUGGCACAUUAUUUCGUGCUAUAAAUUAUGAGUAAGGCCACGCC ....-.-..................((..(--((((((((..((-(((((((....)))))).......(((((((........))))))))))..))))).))))..))... ( -23.30) >consensus AUUC_G_U____________UUCCAGUUUC__CUUUUCACUUC__UUUUGCCUUCCGGCGAAACUUUUAAUGGCACAUUAUUUCGUGCUAUAAAUUAUGAGUAAGGCCGCGCC ................................(((((((......(((((((....)))))))......(((((((........)))))))......)))).)))........ (-13.30 = -14.22 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:31 2006