Locus 9096

Sequence ID 3R_DroMel_CAF1
Location 24,277,010 – 24,277,105
Length 95
Max. P 0.691225
window14559

overview

Window 9

Location 24,277,010 – 24,277,105
Length 95
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 77.37
Mean single sequence MFE -22.59
Consensus MFE -15.68
Energy contribution -16.65
Covariance contribution 0.97
Combinations/Pair 1.08
Mean z-score -1.20
Structure conservation index 0.69
SVM decision value 0.33
SVM RNA-class probability 0.691225
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24277010 95 - 27905053
-GUG-UAUGUG-------------------UCUAUGUUUGCCUGUAUGCAGA-AUGGAUUAAA-AAACUUUUGAUUAACCUUAUCAAAAGCAAAAGCUGUGUAAACAUCGCACAGGGC-
-...-..((((-------------------(..(((((((((((....))).-..........-...((((((((.......))))))))..........)))))))).)))))....- ( -21.10)
>DroGri_CAF1 81039 90 - 1
-------------------------GUUGGUCUAUGUUUGCCUGUAUGCAGA-AUGGAUUAAA-AAACUUUUGAUUAACCUUAUCAAAAGCAAAGGCUAUGUAAACAUCGCACAG-AC-
-------------------------.(((((((((.(((((......)))))-))))))))).-...((((((((.......)))))))).....((.(((....))).))....-..- ( -20.50)
>DroWil_CAF1 64684 88 - 1
------------------------UGUCGGUCUAUGUA----UGUAUGCUGA-AUGGAUUAAA-AAACUUUUGAUUAACCUUAUCAAAAGCAAAAGCAGUGUAAACAUCAUACAGGGC-
------------------------.....((((.((((----(((((((((.-..........-...((((((((.......))))))))......))))))).....))))))))))- ( -16.45)
>DroMoj_CAF1 55340 113 - 1
-AUG-UAUAUAUGUUUCGUGUGUGUGUUGGUCUAUGUUUGCCUGUAUGCAGA-AUGGAUUAAA-AAACUUUUGAUUAACCUUAUCAAAAGCAAAAGCAAUGUAAACAUCGCACAG-AC-
-...-............((.(((((((((((((((.(((((......)))))-))))))))).-...((((((((.......))))))))..................)))))).-))- ( -26.30)
>DroAna_CAF1 96915 113 - 1
GACGGGUCGUGGCGUG-GCGUGUGUGCCGGUCUAUGUUUGCCUGUAUGCAGA-AUGGAUUAAA-AAACUUUUGAUUAACCUUAUCAAAAGCAAAAGCUGUGUAAACAUCGC--AGGGC-
.(((.((((.....))-)).)))..((((((((((.(((((......)))))-)))))))...-...((((((((.......))))))))......(((((.......)))--)))))- ( -29.10)
>DroPer_CAF1 103561 95 - 1
-GUG-----------------------AGGUCUAUGUUGGCCUGUAUGCAGAAAUGGAUUAAAAAAACUUUUGAUUAACCUUAUCAAAAGCAAAAGCUGUGUAAACAUCGCACAGGGCA
-...-----------------------(((((......)))))...(((..................((((((((.......))))))))......((((((.......)))))).))) ( -22.10)
>consensus
__UG_____________________GUCGGUCUAUGUUUGCCUGUAUGCAGA_AUGGAUUAAA_AAACUUUUGAUUAACCUUAUCAAAAGCAAAAGCUGUGUAAACAUCGCACAGGGC_
............................(((((((.(((((......))))).))))))).......((((((((.......)))))))).....((.(((....))).))........ (-15.68 = -16.65 +   0.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:30 2006