| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,269,966 – 24,270,062 |
| Length | 96 |
| Max. P | 0.958532 |
| Location | 24,269,966 – 24,270,062 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 77.03 |
| Mean single sequence MFE | -27.87 |
| Consensus MFE | -17.44 |
| Energy contribution | -17.97 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.63 |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.958532 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24269966 96 - 27905053 -AAAACUCGGGGAGUCACA---GCAAAACAAUUGCUGCCAUUACACUUUGUAAUUCGGUAAUCAGCCAUACGAAUCUGCAUAAUGGCAAUCGGAGCUCGU------------------- -..........((((..((---((((.....)))))(((((((.....(((((((((.............))))).)))))))))))....)..))))..------------------- ( -24.02) >DroPse_CAF1 95774 110 - 1 -CAUAUGCUGGAAAUUCCACAGGCAAAACAAUUGCUGCCAUUACAGUUUGUAAUUUGGUAAUCAGCCAUACGAAUCUGCAUAAUGGCAAUUGGAGCCCAGCCCCAAUCCUG-------- -.....(((((...(((((..(((((.....)))))((((((((((((((((...((((.....)))))))))).)))..)))))))...))))).)))))..........-------- ( -34.80) >DroSim_CAF1 97576 96 - 1 -AAAACUCGGGGAGUCACA---GCAAAACAAUUGCUGCCAUUACAGUUUGUAAUUCGGUAAUCAGCCAUACGAAUCUGCAUAAUGGCAAUCGGAGCUAGU------------------- -....(((.((.......(---((((.....)))))((((((((((((((((....(((.....))).)))))).)))..)))))))..)).))).....------------------- ( -24.90) >DroEre_CAF1 100407 96 - 1 -AAACUUCGGGGAGUCUCA---GCAAAACAAUUGCUGCCAUUACAGUUUGUAAUUCGGUAAUCAGCCAUACGAAUCUGCAUAAUGGCAAUCGGAGCCCGU------------------- -......((((....((((---((((.....)))))((((((((((((((((....(((.....))).)))))).)))..))))))).....))))))).------------------- ( -28.30) >DroWil_CAF1 57327 97 - 1 -UA--------GCGUCACA---GCAAAACAAUUGCUGCCAUUACAGUUUGUAAUUUGGUAAUCAGCCAUACGAAUCUGCAUAAUGGCAAUUGGAGCAACGGCGACAUCG---------- -..--------(((((..(---((((.....)))))((((((((((((((((...((((.....)))))))))).)))..)))))))............)))).)....---------- ( -27.80) >DroAna_CAF1 90333 114 - 1 GCCGAGUC--GCAGUCUCG---GAAAAACAAUUGCUGCUAUUACAGUUUGUAAUUCGGUAAUCAGCCAUACGAAUCAGCAUAAUGGCAAUCGGAGCUCCUCCUCCAUUCGGUUCCCAUA .(((((..--.....))))---)....((((..((((......)))))))).....((.((((.(((((.............)))))....((((......))))....)))).))... ( -27.42) >consensus _AAAACUCGGGGAGUCACA___GCAAAACAAUUGCUGCCAUUACAGUUUGUAAUUCGGUAAUCAGCCAUACGAAUCUGCAUAAUGGCAAUCGGAGCUCGU___________________ .............((..(....((((.....))))(((((((((((((((((....(((.....))).)))))).)))..))))))))...)..))....................... (-17.44 = -17.97 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:28 2006