Locus 9093

Sequence ID 3R_DroMel_CAF1
Location 24,268,423 – 24,268,517
Length 94
Max. P 0.980716
window14555

overview

Window 5

Location 24,268,423 – 24,268,517
Length 94
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 85.34
Mean single sequence MFE -22.79
Consensus MFE -20.87
Energy contribution -20.73
Covariance contribution -0.14
Combinations/Pair 1.07
Mean z-score -2.39
Structure conservation index 0.92
SVM decision value 1.87
SVM RNA-class probability 0.980716
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24268423 94 - 27905053
CAGACGCCGUCUGCUGGCGGCAGAGUCUGCAAAUAGAAAUG-GAAGACGAAUUAAAUUACAUUUAAAGCGCAAGCUGCAAA------------AAAAAGACGAAAAU
.....((((((....))))))...((((........(((((-.................)))))..(((....))).....------------....))))...... ( -22.53)
>DroSec_CAF1 91188 94 - 1
CAGACGCCGUCUGCUGGCGGCAGUGUCUGCAAGUAGAAAUG-GAAAACGAAUUAAAAUACAUUUAAAGCGCAAGUUGCAAA------------AAAAAGACGAAAAU
.....((((((....))))))..(((((........(((((-.................)))))..(((....))).....------------....)))))..... ( -20.13)
>DroSim_CAF1 95872 94 - 1
CAGACGCCGUCUGCUGGCGGCAGUGUCUGCAAGUAGAAAUG-GAAGACGAAUUAAAUUACAUUUAAAGCGCAAGCUGCAAA------------AAAAAGACGAAAAU
.....((((((....))))))..(((((........(((((-.................)))))..(((....))).....------------....)))))..... ( -22.53)
>DroEre_CAF1 98447 102 - 1
CAGACGCCGUCUGCUGGCGGCAGUGUCUGCAAGUAGAAAUG-GAAGACGAAUUAAAUUACAUUUAAAGCGCAAGCUGCAAAA----CACAAAAAAAAAAGUGAAAAU
...((((((((....)))))).((((.(((......(((((-.................)))))..(((....))))))..)----)))..........))...... ( -25.33)
>DroYak_CAF1 95319 106 - 1
CAGACGCCGUCUGCUGGCGGCAGUGUCUGCAAGUAGAAAUG-GAAGACGAAUUAAAUUACAUUUAAAGCGCAAGCUGCAAAAAAACCAAAAAAAAAAAAGCGAAAAU
(((((((((((....))))))...)))))..........((-(........((((((...))))))(((....))).........)))................... ( -23.60)
>DroAna_CAF1 88671 81 - 1
CAGACGCCGUCUGCUGGCGGCGAUGUCUGUAAGAAGAAAUGGGAAGACGAAUUAAAUUACAUUUAAAGCGCAAGCUGCAAA--------------------------
....(((((((....))))))).(((((......(....)....))))).................(((....))).....-------------------------- ( -22.60)
>consensus
CAGACGCCGUCUGCUGGCGGCAGUGUCUGCAAGUAGAAAUG_GAAGACGAAUUAAAUUACAUUUAAAGCGCAAGCUGCAAA____________AAAAAGACGAAAAU
(((((((((((....))))))...))))).....................................(((....)))............................... (-20.87 = -20.73 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:27 2006