Locus 9091

Sequence ID 3R_DroMel_CAF1
Location 24,267,072 – 24,267,178
Length 106
Max. P 0.965566
window14552

overview

Window 2

Location 24,267,072 – 24,267,178
Length 106
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 77.60
Mean single sequence MFE -36.07
Consensus MFE -16.00
Energy contribution -16.08
Covariance contribution 0.09
Combinations/Pair 1.15
Mean z-score -2.85
Structure conservation index 0.44
SVM decision value 1.58
SVM RNA-class probability 0.965566
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24267072 106 - 27905053
UAAUUCACAUAACUUCGGGGCGUGCUGAAAGGCCGUCCGAAGUGGCUUAAUAAAAUAAUUUAUGGUCGAGGCCG---AAGGGCCAUCUCAGUUGGCCGGCCAC-CAACUG
....((.....((((((((.((.(((....)))))))))))))((((..(((((....)))))))))))((((.---...))))....(((((((.......)-)))))) ( -40.20)
>DroVir_CAF1 66130 99 - 1
UAAUUCACAUAACUUUGGGGCGUGCCGAAGGGCCAGCCAAAGUGGCUUAAUAAAAUAAUUUAUGGUUU-GGCAA---AAUGCCCAUUU------ACCG-CCACACAGCCC
.................(((((.(((....)))).......(((((...(((((....)))))(((..-(((..---...))).....------))))-))))...)))) ( -29.60)
>DroPse_CAF1 92695 104 - 1
UAAUUCACAUAACUUUGGGGUGUGCCGAAGGGCCGGCCGAAGUGGCUUAAUAAAAUAAUUUAUGAUUUCGGCCC--UGAGGCACAUUU---UUGGGGGGCACC-CCACUG
................((((((((((..((((((((((.....)))...(((((....))))).....))))))--)..)))))))))---)(((((....))-)))... ( -42.20)
>DroGri_CAF1 71407 98 - 1
UAAUUCACAUAACU-UGGGGCGUGUCGAAGGCCCAGCCAAAGUGGCUUAAUAAAAUAAUUUAUGGCUC-GGCAA---AAUGCCCAUUU------ACCG-CUACACAAUUG
..............-..(((((((((((..(((.((((.....))))..(((((....))))))))))-)))).---..)))))....------....-........... ( -23.70)
>DroAna_CAF1 87283 104 - 1
UAAUUCACAUAACUUCGGGGCGUGCCGAAGGGCCGUCCGAAGUGGCUUAAUAAAAUAAUUUAUGGCCC-GGCCGAGUAAGGGCCGUUUCAGCUGGC----GUC-AGACUG
...........((((((((.((.(((....)))))))))))))((((..(((((....)))))))))(-((((.......)))))...((((((..----..)-)).))) ( -38.50)
>DroPer_CAF1 92493 104 - 1
UAAUUCACAUAACUUUGGGGUGUGCCGAAGGGCCGGCCGAAGUGGCUUAAUAAAAUAAUUUAUGAUUUCGGCCC--UGAGGCACAUUU---UUGGGGGGCACC-CCACUG
................((((((((((..((((((((((.....)))...(((((....))))).....))))))--)..)))))))))---)(((((....))-)))... ( -42.20)
>consensus
UAAUUCACAUAACUUUGGGGCGUGCCGAAGGGCCGGCCGAAGUGGCUUAAUAAAAUAAUUUAUGGUUU_GGCCA___AAGGCCCAUUU___UUGGCCG_CAAC_CAACUG
...........(((((((...(.(((....))))..)))))))((((..(((((....)))))......))))..................................... (-16.00 = -16.08 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:24 2006