Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,068,521 – 3,068,628 |
Length | 107 |
Max. P | 0.629969 |
Location | 3,068,521 – 3,068,628 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 74.83 |
Mean single sequence MFE | -34.96 |
Consensus MFE | -15.45 |
Energy contribution | -15.95 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.31 |
Mean z-score | -1.91 |
Structure conservation index | 0.44 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.614405 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3068521 107 + 27905053 ACCUGCACCAUAUCCAACAGCACCAGCCCUGCCACUUACUCCCGCUCCGGCUCCUACUGCAUAUGGAGCAGGCUUGUUUCCCUCACCCGCUGUUGGAUUUACGCCAA ....((.....((((((((((......................(((((.((.......))....)))))(((........))).....))))))))))....))... ( -29.20) >DroPse_CAF1 55934 107 + 1 UCCGGGUGCGUAUCCCACAGGAACAGCCUUGCCUCUGACCCCCGCCCCCGCCACGACAGCCUAUGGAGCGGGUUUGUUCCCUUCUCCCGCUGUGGGCUACACGCCAA ....((((.(((.((((((((((((((...))........(((((((..((.......))....)).)))))..))))))..........)))))).))).)))).. ( -36.40) >DroGri_CAF1 69713 104 + 1 ACCUGGGUCCUAUCCCACAGGCACAGCUCUGCCCCUGACGCCUGCGCCUGC---AACAGCCUACGGCGCUGGCCUGUUUCCAUCGCCAGCUGUGGGCUAUACGCCAA ...((((......))))(((((.((((((.......)).).))).))))).---...((((((((((..((((.((....))..))))))))))))))......... ( -39.50) >DroYak_CAF1 57431 107 + 1 AGCAGUACCUUAUCCCACAGCACCAGCCCUACCACUUACUCCUGCUCCAACCACCACUGCAUAUGGGGCGGGGUUAUUCCCCUCACCCGCUGUUGGAUUUACGCCUA .((.(((....((((.(((((....((((((...........(((.............)))..))))))((((.....))))......))))).)))).)))))... ( -31.24) >DroAna_CAF1 71894 107 + 1 CCCAGGUCCCUAUCCGACAGCUGCUGCUCUACCCCUGACCCCGGCUCCGGCUACUACUGCCUACGGUGCGGGUUUGUUUCCGUCACCCGCCGUGGGGUUUACGCCUA ..((((((.......)))(((....)))......))).(((((((...(((.......)))...((((((((......)))).)))).)))).)))........... ( -35.10) >DroPer_CAF1 55956 107 + 1 UCCGGGCGCGUAUCCCACAGGAACAGCCUUGCCUCUGACCCCCGCCCCCGCCACGACAGCCUAUGGAGCGGGUUUGUUCCCUUCUCCCGCUGUGGGCUACACGCCAA ....((((.(((.((((((((((((((...))........(((((((..((.......))....)).)))))..))))))..........)))))).))).)))).. ( -38.30) >consensus ACCAGGACCCUAUCCCACAGCAACAGCCCUGCCACUGACCCCCGCUCCCGCCACGACAGCCUAUGGAGCGGGUUUGUUCCCCUCACCCGCUGUGGGCUAUACGCCAA .............(((((((.......................((.............))....((((.(((.......))).))))..)))))))........... (-15.45 = -15.95 + 0.50)
Location | 3,068,521 – 3,068,628 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 74.83 |
Mean single sequence MFE | -43.63 |
Consensus MFE | -22.14 |
Energy contribution | -22.06 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.41 |
Mean z-score | -1.72 |
Structure conservation index | 0.51 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.629969 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3068521 107 - 27905053 UUGGCGUAAAUCCAACAGCGGGUGAGGGAAACAAGCCUGCUCCAUAUGCAGUAGGAGCCGGAGCGGGAGUAAGUGGCAGGGCUGGUGCUGUUGGAUAUGGUGCAGGU ...((((..((((((((((((((...(....)..)))))).......(((.(((..((((..((....))...))))....))).)))))))))))...)))).... ( -37.80) >DroPse_CAF1 55934 107 - 1 UUGGCGUGUAGCCCACAGCGGGAGAAGGGAACAAACCCGCUCCAUAGGCUGUCGUGGCGGGGGCGGGGGUCAGAGGCAAGGCUGUUCCUGUGGGAUACGCACCCGGA ..((.(((((.(((((..(....)..((((((...((((((((....(((.....))).))))))))((((........))))))))))))))).))))).)).... ( -48.80) >DroGri_CAF1 69713 104 - 1 UUGGCGUAUAGCCCACAGCUGGCGAUGGAAACAGGCCAGCGCCGUAGGCUGUU---GCAGGCGCAGGCGUCAGGGGCAGAGCUGUGCCUGUGGGAUAGGACCCAGGU ((((.((....(((((..(((((..((....)).(((.(((((....((....---)).))))).))))))))(((((......)))))))))).....)))))).. ( -49.00) >DroYak_CAF1 57431 107 - 1 UAGGCGUAAAUCCAACAGCGGGUGAGGGGAAUAACCCCGCCCCAUAUGCAGUGGUGGUUGGAGCAGGAGUAAGUGGUAGGGCUGGUGCUGUGGGAUAAGGUACUGCU ..........((((((.(((((((.(((......))))))))(((.....))))).))))))((((......((..((.(((....))).))..))......)))). ( -34.70) >DroAna_CAF1 71894 107 - 1 UAGGCGUAAACCCCACGGCGGGUGACGGAAACAAACCCGCACCGUAGGCAGUAGUAGCCGGAGCCGGGGUCAGGGGUAGAGCAGCAGCUGUCGGAUAGGGACCUGGG ..(((....(((((...((((((...(....)..)))))).(((..(((.......))).....))).....)))))..(((....))))))...(((....))).. ( -37.30) >DroPer_CAF1 55956 107 - 1 UUGGCGUGUAGCCCACAGCGGGAGAAGGGAACAAACCCGCUCCAUAGGCUGUCGUGGCGGGGGCGGGGGUCAGAGGCAAGGCUGUUCCUGUGGGAUACGCGCCCGGA ..((((((((.(((((..(....)..((((((...((((((((....(((.....))).))))))))((((........))))))))))))))).)))))))).... ( -54.20) >consensus UUGGCGUAAAGCCCACAGCGGGUGAAGGAAACAAACCCGCUCCAUAGGCAGUAGUGGCCGGAGCGGGGGUCAGAGGCAGGGCUGUUCCUGUGGGAUACGGACCAGGU ((((.......(((((((.(((....(....)...)))(((((....((.......)).))))).......................))))))).......)))).. (-22.14 = -22.06 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:10 2006