Locus 9089

Sequence ID 3R_DroMel_CAF1
Location 24,264,960 – 24,265,050
Length 90
Max. P 0.924753
window14549

overview

Window 9

Location 24,264,960 – 24,265,050
Length 90
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 89.06
Mean single sequence MFE -28.25
Consensus MFE -22.03
Energy contribution -21.78
Covariance contribution -0.25
Combinations/Pair 1.10
Mean z-score -3.55
Structure conservation index 0.78
SVM decision value 1.16
SVM RNA-class probability 0.924753
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24264960 90 + 27905053
-----AAAAAGUAUAUAUUGUGGGGGCAGGGCCAACAAACUGCGAAUAGAAUGGAAUUUGCAGUGUCCUGG---UCGCCAGACUGCAGCGAAAAAAUU
-----............(((..(.(((..(((((....(((((((((........)))))))))....)))---)))))...)..))).......... ( -27.00)
>DroSec_CAF1 87766 90 + 1
-----AAAAAGUAUAUAUUGUGGGGGCAGGGCCAACAAACUGCGAAUAGAAUGGAAUUUGCAGUGUCCUGG---UCGCCAGACUGCAGCGAAAAAAUU
-----............(((..(.(((..(((((....(((((((((........)))))))))....)))---)))))...)..))).......... ( -27.00)
>DroSim_CAF1 92466 89 + 1
-----AAAAAGUAAA-GUUGUGGGGGCAGGGCCAACAAACUGCGAAUAGAAUGGAAUUUGCAGUGUCCUGG---UCGCCAGACUGCAGCGAAAAAAUU
-----..........-((((..(.(((..(((((....(((((((((........)))))))))....)))---)))))...)..))))......... ( -31.10)
>DroEre_CAF1 95100 90 + 1
-----AAAAAAUAUGUAUUGUAGGGGCAGGGCCAACAAACUGCGAAUAGAAUGGAAUUUGCAGUGUCCUGG---UCGCCAGACUGCAGCGAAAAAAUU
-----............((((((.(((..(((((....(((((((((........)))))))))....)))---)))))...)))))).......... ( -28.20)
>DroYak_CAF1 91824 90 + 1
-----AAAAAGUAUAUAUUGUGGGGGCAGGGCCAACAAACUGCGAAUAGAAUGGAAUUUGCAGUGUCCUGG---UCGCCAGACUGCAGCGAAAAAAUU
-----............(((..(.(((..(((((....(((((((((........)))))))))....)))---)))))...)..))).......... ( -27.00)
>DroAna_CAF1 85167 89 + 1
CACACAAAAA----AUAUCAGUGGGGCAGGGCCAACAAACUGCGAAUAGA-----AUUUGCAGUGUGCUGGAAGCUGCCAGACUGCAGUGAAAAAAUU
..........----....((((..(((((..(((.((.(((((((((...-----))))))))).)).)))...)))))..))))............. ( -29.20)
>consensus
_____AAAAAGUAUAUAUUGUGGGGGCAGGGCCAACAAACUGCGAAUAGAAUGGAAUUUGCAGUGUCCUGG___UCGCCAGACUGCAGCGAAAAAAUU
.................((((....((((.........(((((((((........)))))))))...((((......)))).)))).))))....... (-22.03 = -21.78 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:21 2006