Locus 9087

Sequence ID 3R_DroMel_CAF1
Location 24,261,836 – 24,261,929
Length 93
Max. P 0.783024
window14547

overview

Window 7

Location 24,261,836 – 24,261,929
Length 93
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 95.11
Mean single sequence MFE -13.58
Consensus MFE -11.81
Energy contribution -11.83
Covariance contribution 0.03
Combinations/Pair 1.05
Mean z-score -1.61
Structure conservation index 0.87
SVM decision value 0.56
SVM RNA-class probability 0.783024
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24261836 93 + 27905053
AUA--UAUAAAUAACAUCCUGCCCCUGCUGGCUGUCUUCCU-UUGACUUGCCGUGCAUAAUUAAAUCAGAUCACAUUUUAAAAUUCCAUUUAUAUU
..(--(((((((.............(((((((.(((.....-..)))..)))).)))...(((((...........)))))......)))))))). ( -14.10)
>DroSec_CAF1 84663 93 + 1
AUA--UAUAAAUAACAUCCUGCCCCUGCUGGCUGUCUUCCU-UUGACUUGCCGUGCAUAAUUAAAUCAGAUCACAUUUUAAAAUUCCAUUUAUAUU
..(--(((((((.............(((((((.(((.....-..)))..)))).)))...(((((...........)))))......)))))))). ( -14.10)
>DroSim_CAF1 89341 93 + 1
AUA--UAUAAAUAACAUCCUGGCCCUGCUGGCUGUCUUCCU-UUGACUUGCCGUGCAUAAUUAAAUCAGAUCACAUUUUAAAAUUCCAUUUAUAUU
..(--(((((((.............(((((((.(((.....-..)))..)))).)))...(((((...........)))))......)))))))). ( -14.10)
>DroEre_CAF1 91878 93 + 1
ACA--UAUAAAUAACAUCCUGCCCCGGCUGGCUGUCUGUCU-UUGACUUGCCGUGCAUAAUUAAAUCAGAUCACAUUUUAAAAUUCCAUUUAUAUU
..(--(((((((..((.((.((....)).)).))((((..(-((((..(((...)))...))))).)))).................)))))))). ( -14.50)
>DroYak_CAF1 88562 95 + 1
AUAUAUAUAAAUAACAUCCUGCCCCUGCUGGCUGUCUGUCU-UUGACUUGCCGUGCAUAAUUAAAUCAGAUCACAUUUUAAAAUUCCAUUUAUAUU
....((((((((.............(((((((.(((.....-..)))..)))).)))...(((((...........)))))......)))))))). ( -14.10)
>DroAna_CAF1 81952 94 + 1
ACA--UAUAAAUAACAUCCUGCUCCUGCUGGUCGCCUUCCUUUUGACUUGCCGUGCAUAAUUAAAUCAGAUCACAUUUUAAAAUUCCAUUUAUAUU
..(--(((((((.......(((.(..((.(((((.........))))).)).).)))...(((((...........)))))......)))))))). ( -10.60)
>consensus
AUA__UAUAAAUAACAUCCUGCCCCUGCUGGCUGUCUUCCU_UUGACUUGCCGUGCAUAAUUAAAUCAGAUCACAUUUUAAAAUUCCAUUUAUAUU
.....(((((((..............((((((.(((........)))..)))).))....(((((...........)))))......))))))).. (-11.81 = -11.83 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:20 2006