Locus 9086

Sequence ID 3R_DroMel_CAF1
Location 24,259,158 – 24,259,263
Length 105
Max. P 0.799260
window14546

overview

Window 6

Location 24,259,158 – 24,259,263
Length 105
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 91.05
Mean single sequence MFE -25.36
Consensus MFE -18.76
Energy contribution -21.36
Covariance contribution 2.60
Combinations/Pair 1.12
Mean z-score -2.14
Structure conservation index 0.74
SVM decision value 0.61
SVM RNA-class probability 0.799260
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24259158 105 - 27905053
ACUGGGAGGGGAAUUAGGUAUCCCUUUUAUCCCGCCUAAUUCAACCUUCUUAACGGGUUUUGUUUCAUGAAUAUGUUAUGCAUUUAUUUCAAUAAACAAAAUACG
..(((((((((((((((((..............)))))))))..)))))))).((..((((((((..((((.(((.....)))....))))..))))))))..)) ( -28.54)
>DroSec_CAF1 82063 105 - 1
ACUGGGAGGGGAAUUAGGUAUCCCUUUUAUCCCGCCUAAUUCAACCUUCUUGGCGGGUUUUGUUUCAUGAAUAUGUUAUGCAUUUAUUUCAAUAAACAAAAUACA
.(..(((((((((((((((..............)))))))))..))))))..).(..((((((((..((((.(((.....)))....))))..))))))))..). ( -30.14)
>DroSim_CAF1 86609 105 - 1
NNNNNNNNNNNGAAUAGGUAUCCCUUUUAUCCCGCCUAAUUCAACCUUCUUGGCGGGUUUUGUUUCAUGAAUAUGUUAUGCAUUUAUUUCAAUAAACAAAAUACG
.................(((..........((((((...............))))))((((((((..((((.(((.....)))....))))..))))))))))). ( -20.36)
>DroEre_CAF1 89117 105 - 1
ACUGGGAGGGGAAUUAGGUAUGCCUUUUAUCCCGCUUAAUCCAACCUUCUUGGCGGGUUUUGUUUCAUGAAUAUGUUAUGCAUUUAUUUCAAUAAACAAAAUACG
.(..((((((..(((((((..............)))))))....))))))..)((..((((((((..((((.(((.....)))....))))..))))))))..)) ( -24.94)
>DroYak_CAF1 85761 105 - 1
ACCGGGUGGGGAAUUAGGUAUGCCUUUUAUCCCGGUUAAUUCAACCUUCUUGGCGGGUUUUGAUUCAUGAAUAUGUUAUGCAUUUAUUUCAAUAAACAAAAUACG
.(((((..((((...(((....)))....))))((((.....))))..)))))((..(((((.....((((.(((.....)))....)))).....)))))..)) ( -22.80)
>consensus
ACUGGGAGGGGAAUUAGGUAUCCCUUUUAUCCCGCCUAAUUCAACCUUCUUGGCGGGUUUUGUUUCAUGAAUAUGUUAUGCAUUUAUUUCAAUAAACAAAAUACG
.((((((((((((((((((..............)))))))))..))))))))).(..((((((((..((((.(((.....)))....))))..))))))))..). (-18.76 = -21.36 +   2.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:19 2006