Locus 9085

Sequence ID 3R_DroMel_CAF1
Location 24,256,628 – 24,256,739
Length 111
Max. P 0.995890
window14545

overview

Window 5

Location 24,256,628 – 24,256,739
Length 111
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 95.15
Mean single sequence MFE -23.65
Consensus MFE -21.90
Energy contribution -22.06
Covariance contribution 0.16
Combinations/Pair 1.04
Mean z-score -1.86
Structure conservation index 0.93
SVM decision value 2.63
SVM RNA-class probability 0.995890
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24256628 111 - 27905053
AAACCUUAAAAUCAAUUGCGAAUACUUCACUGUACUUAAUGCUCUUCUCAGACGUUUUGUUCAUGGCCUGAACU-UCAGGCGGCAAAUAAAUAUGAGGUGCAAUAUUUUUUC
..((((((.......((((........((.((.((..((((.(((....)))))))..)).))))(((((....-.))))).)))).......))))))............. ( -23.54)
>DroSec_CAF1 79552 111 - 1
AAACCUUAAAAUCAAUUGCGAAUACUUCACUGUACUUAAUGCUCUUCUCAGACGUUUUGUUCACAGCCUGAACU-UCAGGCGGGAUAUGAAUUUGAGGUGCAAUAUUUUUUC
..((((((((.((((((.(...........((.((..((((.(((....)))))))..)).))..(((((....-.)))))).))).))).))))))))............. ( -26.30)
>DroSim_CAF1 84100 111 - 1
AAACCUUAAAAUCAAUUGCGAAUACUUCACUGUACUUAAUGCUCUUCUCAGACGUUUUGUUCACAGCCUGAACU-UCAGGCGGCAUAUAAAUUUGAGGUGCAAUAUUUUUUC
..((((((((......(((...........((.((..((((.(((....)))))))..)).))..(((((....-.))))).)))......))))))))............. ( -24.80)
>DroEre_CAF1 84843 111 - 1
AAACCUUAAAAUCAAUUGCAAAUACUUCACUGUACUUAAUGUUCUUCUCAGACGUUUUGUUCACAGUCUGAACU-CCAGGCGGCAUAUAAAUUUGAGGUGCAAUAUUUUUUU
..((((((((......(((...........((.((..((((((.......))))))..)).))..(((((....-.))))).)))......))))))))............. ( -21.90)
>DroYak_CAF1 83154 112 - 1
AAACCUUAAAAUCAAUUGCAAAUACUUCACUGUACUUAAUGCUCUUCUCAGACGUUUUGUUCACAGUCUGAACUUCCAGGCGGCAUAUAAAUUUGAGGUGCAAUAUUUUUUC
..((((((((......(((...........((.((..((((.(((....)))))))..)).))..(((((......))))).)))......))))))))............. ( -21.70)
>consensus
AAACCUUAAAAUCAAUUGCGAAUACUUCACUGUACUUAAUGCUCUUCUCAGACGUUUUGUUCACAGCCUGAACU_UCAGGCGGCAUAUAAAUUUGAGGUGCAAUAUUUUUUC
..((((((((......(((...........((.((..((((.(((....)))))))..)).))..(((((......))))).)))......))))))))............. (-21.90 = -22.06 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:18 2006