| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,254,393 – 24,254,485 |
| Length | 92 |
| Max. P | 0.714121 |
| Location | 24,254,393 – 24,254,485 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 77.81 |
| Mean single sequence MFE | -27.80 |
| Consensus MFE | -15.74 |
| Energy contribution | -16.72 |
| Covariance contribution | 0.97 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.714121 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24254393 92 + 27905053 -----------GGACAGUGAGCAGCGGC--GAAUGGUAAAUGAAAUGCCGUGUAAGAAUUUAUAGAAAAUGUAUUUAUGCGU--CGCUCUGCUCUGUUCCAUUUCGU -----------(((....((((((.(((--((((((((.......))))))(((.((((.(((.....))).)))).))).)--))))))))))...)))....... ( -27.30) >DroPse_CAF1 79437 94 + 1 GGCACUGGCACUGGCACUG-GCAGUGGCACAAAUGGCAAAUGAAAUGCCGUGCAAGAAUUUAUAGAA-AUUUAUUUAUGCUC--CUCUCUGCU---------GGCGC .((((((.(((((.(...)-.))))).)).....((((.......))))))))..((((((....))-))))......((.(--(........---------)).)) ( -24.10) >DroSim_CAF1 81883 92 + 1 -----------GGACAGCGAGCAGCGGC--GAAUGGCAAAUGAAAUGCCGUGCAAGAAUUUAUAGAAAAUGUAUUUAUGCGU--CGCUCUGCUCUGUUCCAUUUCGU -----------(((..((((((((.(((--((((((((.......))))))(((.((((.(((.....))).)))).))).)--)))))))))).)))))....... ( -31.30) >DroEre_CAF1 82639 94 + 1 -----------GGACAGCGAGCAGCGGC--GAAUGGUAAAUGAAAUGCCGUGCAAGAAUUUAUAGAAAAUGUAUUUAUGCGUCUCGCUCUGCUCUGUUCCAAUUCGU -----------(((..((((((((.(((--((((((((.......))))))(((.((((.(((.....))).)))).)))...))))))))))).)))))....... ( -29.20) >DroYak_CAF1 80922 92 + 1 -----------GGACAGCGAGCAGUGGC--GAAUGGUAAAUGAAAUGCCGUGCAAAAAUUUAUAGAAAAUGUAUUUAUGCGU--CGCUCUGCUCUGUUCCAUUUCGU -----------(((..((((((((.(((--((((((((.......))))))(((.((((.(((.....))).)))).))).)--)))))))))).)))))....... ( -28.90) >DroPer_CAF1 79319 94 + 1 GGCACUGGCACUGGCAGUG-GCAGUGGCACAAAUGGCAAAUGAAAUGCCGUGCAAGAAUUUAUAGAA-AUUUAUUUAUGCUC--CUCUCCGCU---------GGCGC .((....))...(.(((((-(.((.((.....((((((.......))))))(((.((((..((....-))..)))).))).)--).)))))))---------).).. ( -26.00) >consensus ___________GGACAGCGAGCAGCGGC__GAAUGGCAAAUGAAAUGCCGUGCAAGAAUUUAUAGAAAAUGUAUUUAUGCGU__CGCUCUGCUCUGUUCCAUUUCGU ..................((((((.(((....((((((.......))))))(((.((((.(((.....))).)))).))).....)))))))))............. (-15.74 = -16.72 + 0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:17 2006