Locus 9082

Sequence ID 3R_DroMel_CAF1
Location 24,251,738 – 24,251,837
Length 99
Max. P 0.806810
window14541

overview

Window 1

Location 24,251,738 – 24,251,837
Length 99
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 85.39
Mean single sequence MFE -27.92
Consensus MFE -20.30
Energy contribution -20.94
Covariance contribution 0.64
Combinations/Pair 1.10
Mean z-score -2.01
Structure conservation index 0.73
SVM decision value 0.63
SVM RNA-class probability 0.806810
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24251738 99 + 27905053
CUUUUUGAGGCAUCAGGGCAUUUUAUGCAAAUGUGGCAACUUUAUGGUUUGUUGCUGGUGCAUGUGCAUGUGC------AUAUGCAAGUGCAUGUUCUAGUGAAC
..........(((.((((((...((((((...(..((((((....)).))))..)...))))))(((((.(((------....))).))))))))))).)))... ( -31.10)
>DroSec_CAF1 74661 84 + 1
CUUUUUGAGGCAUCAGGGCAUUUUAUGCAAAUGUGGCAACUUUAUGGUUUGUUGCUGGUGCAUGUCCAUGUGC------AUAUGCAAGUG---------------
.........((((..(.((((..((((((...(..((((((....)).))))..)...))))))...)))).)------..)))).....--------------- ( -23.60)
>DroSim_CAF1 79205 84 + 1
CUUUUUGAGGCAUCAGGGUAUUUUAUGCAAAUGUGGCAACUUUAUGGUUUGUUGCUGGUGCAUGUGCAUGUGC------AUAUGCAAGUG---------------
........((((.((((.(((....(((.......))).....))).)))).))))..(((((((((....))------)))))))....--------------- ( -23.50)
>DroEre_CAF1 79922 99 + 1
CUUUUUGAGGCAUCAGGGCAUUUUAUGCAAAUGUGGCAACUUUAUGGUUUGCUGCUGGUGCAUGUGCAUAUGC------AUAUGGAAGUGCAUGUUCUAGUGAAC
...(((((....)))))(((((((..(((...(..((((((....)).))))..)...)))((((((....))------)))).)))))))..((((....)))) ( -29.40)
>DroYak_CAF1 78155 105 + 1
CUUUUUGAGGCAUCAGGGCAUUUUAUGCAAAUGUGGCAACUUUAUGGUUUGCUGCUGGUUCAUGUGCAUGUGCAGGUUCAUAUGCAACUGCAUGUUCUGGUGAAC
..........((((((((((.....((((...(..((((((....)).))))..).........((((((((......))))))))..))))))))))))))... ( -32.00)
>consensus
CUUUUUGAGGCAUCAGGGCAUUUUAUGCAAAUGUGGCAACUUUAUGGUUUGUUGCUGGUGCAUGUGCAUGUGC______AUAUGCAAGUGCAUGUUCU_GUGAAC
...(((((....)))))(((((.((((((...(..((((((....)).))))..)...))))))(((((((........)))))))))))).............. (-20.30 = -20.94 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:14 2006