Locus 9080

Sequence ID 3R_DroMel_CAF1
Location 24,250,707 – 24,250,797
Length 90
Max. P 0.917684
window14536

overview

Window 6

Location 24,250,707 – 24,250,797
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 97.78
Mean single sequence MFE -19.70
Consensus MFE -19.58
Energy contribution -19.42
Covariance contribution -0.16
Combinations/Pair 1.05
Mean z-score -1.37
Structure conservation index 0.99
SVM decision value 1.12
SVM RNA-class probability 0.917684
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24250707 90 + 27905053
GCUGAAAGGAGCUGCCUGUUCCUAAUCCGCUUCACAUUUUAUCAGCGCUGUGACAGUGGCUCUCUCACAUCCUUGAAUUCAAUUCCCCUC
..((((((((((.....))))))...((((((((((............))))).)))))..................))))......... ( -18.90)
>DroSec_CAF1 73635 90 + 1
GCUGAAAGGAGCUGCCUGUUCCUAAUCCGCUUCACAUUUUAUCAGCGCUGUGACAGUGGCUCUCUCACAUCCUUGAAUUCAAUCCCCCUC
..((((((((((.....))))))...((((((((((............))))).)))))..................))))......... ( -18.90)
>DroSim_CAF1 78181 90 + 1
GCUGAAAGGAGCUGCCUGUUCCUAAUCCGCUUCACAUUUUAUCAGCGCUGUGACAGUGGCUCUCUCACAUCCUUGAAUUCAAUCCCCCUC
..((((((((((.....))))))...((((((((((............))))).)))))..................))))......... ( -18.90)
>DroEre_CAF1 78887 90 + 1
GCUGAAAGGAGCUGCCUGUUCCUAAUCCGCUUCACAUUUUAUCAGCGCUGUGACAGUGGCUCUCUCACAUCCUUGAAUUCAAUCCCGUUC
..((((((((((.....))))))...((((((((((............))))).)))))..................))))......... ( -18.90)
>DroYak_CAF1 77135 90 + 1
GAUGAAAGGAGCUGCCUGCUCCUAAUCCGCUUCACAUUUUAUCAGCGCUGUGACAGUGGCUCUCUCACAUCCUUGAAUUCAAUCCCCCUC
((((..((((((.....))))))...((((((((((............))))).)))))........))))................... ( -22.90)
>consensus
GCUGAAAGGAGCUGCCUGUUCCUAAUCCGCUUCACAUUUUAUCAGCGCUGUGACAGUGGCUCUCUCACAUCCUUGAAUUCAAUCCCCCUC
..((((((((((.....))))))...((((((((((............))))).)))))..................))))......... (-19.58 = -19.42 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:10 2006