Locus 908

Sequence ID 3R_DroMel_CAF1
Location 3,067,770 – 3,067,873
Length 103
Max. P 0.688059
window1440

overview

Window 0

Location 3,067,770 – 3,067,873
Length 103
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 75.37
Mean single sequence MFE -28.09
Consensus MFE -14.30
Energy contribution -14.66
Covariance contribution 0.36
Combinations/Pair 1.06
Mean z-score -1.79
Structure conservation index 0.51
SVM decision value 0.32
SVM RNA-class probability 0.688059
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3067770 103 - 27905053
CAGUUGCUGAAAUAACGCACUGCAACAUCAAUUGGCUUGCAAGA---AUUGCGGCAGCC-GGUG------GGCCAAAGGCAAGACGCAUGCCUCGUAAAUAUGCAAGGCAGCA
..(((((..............)))))....(((((((((((...---..))))..))))-))).------.(((...))).....((.(((((.(((....))).))))))). ( -30.44)
>DroVir_CAF1 112210 102 - 1
C-------ACAACAACACACUGCCACAUCUAUGGGCUGUUAAGA---AUUGCGAUUGCU-GUUCGCUUGUGGCCAAAAACAAGACGCAUGCCUCGUAAAUAUGCAAGGCAGCA
.-------...........(((((.(((.((((((((((...((---((.((....)).-))))((((((........))))).)))).))).))))...)))...))))).. ( -25.80)
>DroPse_CAF1 55187 106 - 1
CUAUUGCAACAAUAACGCACUCCAACAUCAAUUGGCUGCCAACAACAAUCUCCAGAGCU-CUGA------GCUCUGCCCCAAGACGCAUGCAUCGUAAAUAUGCAAGGCAGCA
....(((.........)))...............((((((............((((((.-....------))))))............(((((.......))))).)))))). ( -26.40)
>DroGri_CAF1 68885 103 - 1
A-------ACAACAACGCACUGCAACAUCAAUUGGCUGCCAAGA---AUUGCGAUUGCUUGUUUGCUUUCGGCCAAAAAGAAGACGCAUGCCUCGUAAAUAUGCAAGGCAGCA
.-------........((..(((..(.((..((((((((.....---...))((..((......))..))))))))...)).)..)))(((((.(((....))).))))))). ( -27.00)
>DroMoj_CAF1 82568 101 - 1
U-------AC-UCAACGCACCGCCUCAUCAAUGGGCUGGCAAGU---AUUGCGAUUGCU-AUUCGCUUAUGGCCAAAAACAAGACGCAUGCCUCGUAAAUAUGCAAGGCAGCA
.-------..-..........(((.((....)))))((((..((---(..((((.....-..)))).))).))))..........((.(((((.(((....))).))))))). ( -27.00)
>DroAna_CAF1 71265 103 - 1
CAAUUGCAACAAUAACGCACUGCAACAUCAAUUGGCUGCCAAGA---AUUGCGGCAGCU-GGUG------GGCCAAAGGCAAGACGCAUGCCUCGUAAAUAUGCAAGGCAGCA
................((..(((.......((..((((((....---.....)))))).-.)).------.(((...))).....)))(((((.(((....))).))))))). ( -31.90)
>consensus
C_______ACAACAACGCACUGCAACAUCAAUUGGCUGCCAAGA___AUUGCGAUAGCU_GUUC______GGCCAAAAACAAGACGCAUGCCUCGUAAAUAUGCAAGGCAGCA
.................................((((.............((....))............))))...........((.(((((.(((....))).))))))). (-14.30 = -14.66 +   0.36) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:08 2006