Locus 9079

Sequence ID 3R_DroMel_CAF1
Location 24,248,710 – 24,248,804
Length 94
Max. P 0.779957
window14535

overview

Window 5

Location 24,248,710 – 24,248,804
Length 94
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 84.31
Mean single sequence MFE -27.60
Consensus MFE -24.01
Energy contribution -23.93
Covariance contribution -0.08
Combinations/Pair 1.12
Mean z-score -1.74
Structure conservation index 0.87
SVM decision value 0.55
SVM RNA-class probability 0.779957
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24248710 94 + 27905053
UUGCCUUGCAACAUUUUUGAUCAAUUUAAAUGCCCGUCUAAGACAAUAA-AAGUCUUAUUGGACCGGCUUAGCUGGGGAUUUCGAAAGGCCGAA-----------------U
...(((.((......(((((.....))))).(((.(((((((((.....-..))))...))))).)))...)).)))...((((......))))-----------------. ( -21.80)
>DroPse_CAF1 73147 108 + 1
U----UUGCUACAUUUUUGAUCAAUUUAAAUGCUCGGCUAAGACAAUAAAAAGUCUUAUUGGGGCGGCUUAGCUGGGGAUUUCAAGAGGCCACUGUCAGAGGCAAGUCCCUU
.----..((((....(((((.....)))))(((((.(.((((((........)))))).).)))))...)))).((((((((......(((.(.....).))))))))))). ( -27.90)
>DroSec_CAF1 71630 95 + 1
UUGCCUUGCAACAUUUUUGAUCAAUUUAAAUGCCCGGCUAAGACAAUAAAAAGUCUUAUUGGACCGGCUUAGCUGGGGAUUUCGAGAGGCCGAA-----------------U
..((((..(..((....))........((((.((((((((((.((((((......))))))......)))))))))).)))).)..))))....-----------------. ( -29.00)
>DroSim_CAF1 76178 95 + 1
UUGCCUUGCAACAUUUUUGAUCAAUUUAAAUGCCCGGCUAAGACAAUAAAAAGUCUUAUUGGACCGGCUUAGCUGGGGAUUUCGAGAGGCCGAA-----------------U
..((((..(..((....))........((((.((((((((((.((((((......))))))......)))))))))).)))).)..))))....-----------------. ( -29.00)
>DroYak_CAF1 75094 95 + 1
UUGUCUUGCAACAUUUUUGAUCAAUUUAAAUGCCCGGCUAAGACAAUAAAAAGUCUUAUUGGACCGGCUUAGCUGGGGAUUUCGAGAGGCCGAA-----------------U
...............((((..(..((.((((.((((((((((.((((((......))))))......)))))))))).)))).))..)..))))-----------------. ( -27.00)
>DroPer_CAF1 73067 108 + 1
U----UUGCUACAUUUUUGAUCAAUUUAAAUGCCCGGCUAAGACAAUAAAAAGUCUUAUUGGGGCGGCUUAGCUGGGGAUUUCAAGAGGCCACUGUCAGAGGCAAGUCCCUU
.----..((((....(((((.....)))))(((((.(.((((((........)))))).).)))))...)))).((((((((......(((.(.....).))))))))))). ( -30.90)
>consensus
UUGCCUUGCAACAUUUUUGAUCAAUUUAAAUGCCCGGCUAAGACAAUAAAAAGUCUUAUUGGACCGGCUUAGCUGGGGAUUUCGAGAGGCCGAA_________________U
................(((..(..((.((((.((((((((((.((((((......))))))......)))))))))).)))).))..)..)))................... (-24.01 = -23.93 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:09 2006