| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,246,694 – 24,246,788 |
| Length | 94 |
| Max. P | 0.997509 |
| Location | 24,246,694 – 24,246,788 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 90.43 |
| Mean single sequence MFE | -19.35 |
| Consensus MFE | -19.42 |
| Energy contribution | -17.93 |
| Covariance contribution | -1.50 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.50 |
| Structure conservation index | 1.00 |
| SVM decision value | 2.87 |
| SVM RNA-class probability | 0.997509 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24246694 94 + 27905053 AUAGUAAACAUUGACAGAAUUUCAGCGAAAAUAUCGAAAUGAAAAUAAGAUAAAUGUAAAUGUAUUCCAUUUGCUGUUUGCUACAUUGCAAAAU .(((((((((.........(((((.(((.....)))...)))))...........(((((((.....))))))))))))))))........... ( -19.20) >DroSec_CAF1 69431 94 + 1 AUAGUAUACAUUGAUAGAAUUUCAGCGAAAAUAUCGAAAUGAAAAUAAGAUAAAUGUAAAUGUAUUCCAUUUGCUGUAUGCUGCAGGGCAAAAU .(((((((((.........(((((.(((.....)))...)))))...........(((((((.....))))))))))))))))........... ( -19.50) >DroSim_CAF1 73985 94 + 1 AUAGUAAACAUUGAUAGAAUUUCAGCGAAAAUAUCGAAAUGAAAAUAAGAUAAAUGUAAAUGUAUUCCAUUUGCUGUUUGCUGCAGGGCAAAAU .(((((((((.........(((((.(((.....)))...)))))...........(((((((.....))))))))))))))))........... ( -18.90) >DroYak_CAF1 72978 94 + 1 AUAGUAAAUAUUGAUGGAAUUUUAGCGAAAAUAUCGAAAUGAAAUUGGAAUAAAUACAAAUGUGUUCCAUUUGUUGUUUGCUGCAGGGGAAAAU .(((((((((..((((((((((((.(((.....)))...)))))))......(((((....))))))))))...)))))))))........... ( -19.80) >consensus AUAGUAAACAUUGAUAGAAUUUCAGCGAAAAUAUCGAAAUGAAAAUAAGAUAAAUGUAAAUGUAUUCCAUUUGCUGUUUGCUGCAGGGCAAAAU .(((((((((.........(((((.(((.....)))...)))))...........(((((((.....))))))))))))))))........... (-19.42 = -17.93 + -1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:08 2006