Locus 9077

Sequence ID 3R_DroMel_CAF1
Location 24,245,918 – 24,246,012
Length 94
Max. P 0.817487
window14533

overview

Window 3

Location 24,245,918 – 24,246,012
Length 94
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 91.06
Mean single sequence MFE -32.04
Consensus MFE -25.38
Energy contribution -25.58
Covariance contribution 0.20
Combinations/Pair 1.08
Mean z-score -1.74
Structure conservation index 0.79
SVM decision value 0.67
SVM RNA-class probability 0.817487
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24245918 94 + 27905053
ACACACACACGUACUGCAGCCGCAGCGAGUAUACACUUAUGUGUGCCCCAUAGGGGCAAUAGUCACCGGAAGGACUCGGCUUGGCAAGUGAAUU
.......(((....((((((((.((.((.(((((((....))))(((((...))))).))).)).((....)).)))))))..))).))).... ( -33.60)
>DroSec_CAF1 68548 90 + 1
ACA----CGCGUACUGCAUCCGCAGCGAGUAUACACUUAUGUGUGCCCCAUAGGGGCAAUAGUCGCCGGAAGGACUCGGCUUGGCAAGUGAAUU
.((----(..((.((((....))))(((((..((((....))))(((((...)))))........((....))))))).....))..))).... ( -31.20)
>DroSim_CAF1 73061 94 + 1
ACACACGCGCGUACUGCAUCCGCAGCGAGUAUACACUUAUGUGUGCCCCAUAGGGGCAAUAGUCGCCGGAAGGACUCGGCUUGGCAAGUGAAUU
...(((..((...((((....))))(((((..((((....))))(((((...)))))........((....))))))).....))..))).... ( -33.20)
>DroEre_CAF1 73940 94 + 1
ACACGCACACGUACUGCAGGCGCACCGAGUAGACACUUAUGUGUGCCUCAUAGGGGCAAUAGUCGCCGGAAGGACUCGGCAAGGCAAGUGAAUU
.(((((...(.((.((.((((((((.((((....))))..)))))))))))).).))....((((((((......)))))..)))..))).... ( -31.50)
>DroYak_CAF1 72196 94 + 1
AUACACACACGUACUGCAGGCACACCGAGCAGACACUUAUGUGUACCCCAUAGGGGCAAUAGUCGCCGGAAGGACUCGGCUUGGCAAGUGAAUU
...((((((((((((((.((....))..)))).....))))))).(((....)))((...(((((((....))...)))))..))..))).... ( -30.70)
>consensus
ACACACACACGUACUGCAGCCGCAGCGAGUAUACACUUAUGUGUGCCCCAUAGGGGCAAUAGUCGCCGGAAGGACUCGGCUUGGCAAGUGAAUU
.......(((....(((....((..(((((..((((....))))(((((...)))))........((....)))))))))...))).))).... (-25.38 = -25.58 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:07 2006