Locus 9076

Sequence ID 3R_DroMel_CAF1
Location 24,245,186 – 24,245,279
Length 93
Max. P 0.500000
window14532

overview

Window 2

Location 24,245,186 – 24,245,279
Length 93
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 81.07
Mean single sequence MFE -27.37
Consensus MFE -16.94
Energy contribution -16.56
Covariance contribution -0.39
Combinations/Pair 1.26
Mean z-score -1.54
Structure conservation index 0.62
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24245186 93 + 27905053
GGUUGAGUUUAACGAACAUUUAUGCGA-GUGCG--------GUUGUUUAUGCUCAACCCGAGUUAUGUGGCACUCGAGAGGCGUGGCAA---CCACACACUCACG
((((((((..(((((.(((((....))-)))..--------.)))))...)))))))).((((..((((((((((....)).)))....---))))).))))... ( -31.10)
>DroPse_CAF1 69671 93 + 1
UGUUGAGUUUAACGAACAUUUAUGCGA-GUGCG--------GUUGUUUAUGCUGAGCUCGAGUUAUGUGGCACUUAAGAGGCGUGGCAA---CCACACACACACA
.((((....)))).........((.(.-(((.(--------((((((.(((((...((..(((........)))..)).))))))))))---)).))).).)).. ( -24.80)
>DroGri_CAF1 47176 86 + 1
AGCUGAGUUUAACAAACAUUUAUGCUU-GUGCA--------GUUGUUUAUGCUAAGCUCGAGUUAUGUGCCACUUAAGAGGCGUGGCACGAGCAC----------
.((((((((((.((((((....(((..-..)))--------..))))..)).)))))))......((((((((.........)))))))))))..---------- ( -28.90)
>DroWil_CAF1 27961 90 + 1
GGUUGAGUUUAACGAACAUUUAUGCUAUAUGCGGUUGGUUGGUUGUUUAUGCUGAGCUCGAGUUAUGUGGCACUUUAGAGGCGUGGCAG---G------------
..(((((((((((.(((.....(((.....)))....))).)))((....)).))))))))(((((((..(......)..)))))))..---.------------ ( -21.40)
>DroAna_CAF1 65824 89 + 1
GGUUGAGUUUAACGAACAUUUAUGCGA-GUGCG--------GUUGUUUAUGCUAAGCUCGAGUUAUGUGGCACUUAAGAGGCGUGGCAG---CCGCACUC--A--
.((((....))))............((-(((((--------((((((.(((((...((..(((........)))..)).))))))))))---))))))))--.-- ( -33.20)
>DroPer_CAF1 69569 93 + 1
UGUUGAGUUUAACGAACAUUUAUGCGA-GUGCG--------GUUGUUUAUGCUGAGCUCGAGUUAUGUGGCACUUAAGAGGCGUGGCAA---CCACACACACACA
.((((....)))).........((.(.-(((.(--------((((((.(((((...((..(((........)))..)).))))))))))---)).))).).)).. ( -24.80)
>consensus
GGUUGAGUUUAACGAACAUUUAUGCGA_GUGCG________GUUGUUUAUGCUGAGCUCGAGUUAUGUGGCACUUAAGAGGCGUGGCAA___CCACACAC__A__
((((.(((..(((((.......(((.....))).........)))))...))).))))...(((((((..(......)..))))))).................. (-16.94 = -16.56 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:06 2006