Locus 9075

Sequence ID 3R_DroMel_CAF1
Location 24,241,799 – 24,241,891
Length 92
Max. P 0.924361
window14531

overview

Window 1

Location 24,241,799 – 24,241,891
Length 92
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 85.09
Mean single sequence MFE -33.22
Consensus MFE -26.48
Energy contribution -26.23
Covariance contribution -0.25
Combinations/Pair 1.15
Mean z-score -3.14
Structure conservation index 0.80
SVM decision value 1.16
SVM RNA-class probability 0.924361
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24241799 92 - 27905053
GUGGAUGUGG---AUGUGGAUGU-UUCUGUCUGCUGACAUGAGCUGCAAAGUGCGGCACGUGUUGGCGUAACAAUU-UGGCAGGACCAAA-AUAGCAA--
.....(((..---...(((....-((((((((((..(((((.(((((.....))))).)))))..)))........-.))))))))))..-...))).-- ( -32.00)
>DroSec_CAF1 64429 88 - 1
----CUGCGA---AUGUGGAUAU-UUCUGUCUUCUGACAUGAGCUGCAAAGUGCGGCACGUGUUGGCGUAACAAUU-UGGCAGGACCAAA-AUAGCAA--
----.(((..---...(((....-(((((((..(..(((((.(((((.....))))).)))))..)..........-.))))))))))..-...))).-- ( -28.82)
>DroSim_CAF1 68932 88 - 1
----AUGUGG---AUGUGGAUGU-UUCUGUCUGCUGACAUGAGCUGCAAAGUGCGGCACGUGUUGGCGUAACAAUU-UGGCAGGACCAAA-AUAGCAA--
----.(((..---...(((....-((((((((((..(((((.(((((.....))))).)))))..)))........-.))))))))))..-...))).-- ( -32.00)
>DroEre_CAF1 69757 86 - 1
GUGGAUGUGA---AUGUGAAUGU-UUCUGUCUGCUGACAUGAGCUGCAAAGUGCGGCACGUGUUGGCGUAACAAUU-UGGCAGGACCAAA-A--------
..........---.......((.-((((((((((..(((((.(((((.....))))).)))))..)))........-.))))))).))..-.-------- ( -28.80)
>DroYak_CAF1 68018 95 - 1
GUGGAUGUGG---AUGUGGAUGU-UUCUGUCUGCUGACAUGAGCUGCAAAGUGCGGCACGUGUUGGCGUAACAAUU-UGGCAGGACCAAACACAGCAGCA
.....(((..---.((((..((.-((((((((((..(((((.(((((.....))))).)))))..)))........-.))))))).))..))))...))) ( -37.70)
>DroPer_CAF1 66158 95 - 1
-UGGGUGUUGCUUCUGUUGAUGUGUCCUGUCUGCUGACAUGAGCUGCAAAGUGUGGCACGUGUUGGCGUAACAAUUUUGGCAGGGCA----CUAGCAUCA
-..(((((((..((....)).(((((((((((((..(((((.((..(.....)..)).)))))..)))..........)))))))))----)))))))). ( -40.00)
>consensus
_UGGAUGUGG___AUGUGGAUGU_UUCUGUCUGCUGACAUGAGCUGCAAAGUGCGGCACGUGUUGGCGUAACAAUU_UGGCAGGACCAAA_AUAGCAA__
........................((((((((((..(((((.(((((.....))))).)))))..)))..........)))))))............... (-26.48 = -26.23 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:05 2006