| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,239,460 – 24,239,550 |
| Length | 90 |
| Max. P | 0.999867 |
| Location | 24,239,460 – 24,239,550 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 93.27 |
| Mean single sequence MFE | -28.30 |
| Consensus MFE | -24.80 |
| Energy contribution | -24.80 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.09 |
| Mean z-score | -3.22 |
| Structure conservation index | 0.88 |
| SVM decision value | 4.31 |
| SVM RNA-class probability | 0.999867 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24239460 90 + 27905053 AACAAUGCCGGCGAAAGCAGCAGCUGGCUGGAGGUAGUGCAGCUGCA-UGGGUACACGCAGAAAAAUCAAUUGUAGAAUGAAAAAAUUAUU .((((((((.((....)).(((((((((((....)))).))))))).-..))).......((....)).)))))................. ( -24.80) >DroSec_CAF1 62108 91 + 1 AACAAUGCCGGCGAAGGCAGCAGCUGGCUGGAGGUAGUGCAGCUGCAUUGGGUACACCCAGAAAAAUCAAUUGUAGAAUGGAAAAAUUAUU .((((((((......))).(((((((((((....)))).))))))).(((((....)))))........)))))................. ( -28.80) >DroSim_CAF1 66609 91 + 1 AACAAUGCCGGCGAAAGCAGCAGCUGGCUGGAGGUAGUGCAGCUGCGUUGGGUACACCCAGAAAAAUCAAUUGUAGAAUGGAAAAAUUAUU .(((((....((....)).(((((((((((....)))).))))))).(((((....)))))........)))))................. ( -28.20) >DroEre_CAF1 67406 90 + 1 AACAAUGCCGGCGAAAGCAGCAGCUGACUGGAGGUAGUGCAGCUGCA-UGGGUACACCCAGAAAAAUCAAUUGUGCAAUUGAAAAAUGAUU ..((((((((((....)).(((((((((((....)))).))))))).-((((....))))...........)).)).)))).......... ( -29.80) >DroYak_CAF1 65641 90 + 1 AACAAUGCCGGCGAAUGCAGCAGCUGACUGGAGGUAGUGCGGCUGCA-UGGGUACACCCAGAAAAAUCAUUUGUGCAAUUGAAAAAUUAUU ..((((((..(((((((..(((((((((((....)))).))))))).-((((....)))).......))))))))).)))).......... ( -29.90) >consensus AACAAUGCCGGCGAAAGCAGCAGCUGGCUGGAGGUAGUGCAGCUGCA_UGGGUACACCCAGAAAAAUCAAUUGUAGAAUGGAAAAAUUAUU .(((((....((....)).(((((((((((....)))).)))))))..((((....)))).........)))))................. (-24.80 = -24.80 + 0.00)
| Location | 24,239,460 – 24,239,550 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 93.27 |
| Mean single sequence MFE | -20.90 |
| Consensus MFE | -16.38 |
| Energy contribution | -16.86 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.802633 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24239460 90 - 27905053 AAUAAUUUUUUCAUUCUACAAUUGAUUUUUCUGCGUGUACCCA-UGCAGCUGCACUACCUCCAGCCAGCUGCUGCUUUCGCCGGCAUUGUU .................(((((........(((((((....))-)))))..............(((.((..........)).)))))))). ( -16.30) >DroSec_CAF1 62108 91 - 1 AAUAAUUUUUCCAUUCUACAAUUGAUUUUUCUGGGUGUACCCAAUGCAGCUGCACUACCUCCAGCCAGCUGCUGCCUUCGCCGGCAUUGUU .................(((((.........((((....))))..(((((((..((......)).))))))).(((......)))))))). ( -22.00) >DroSim_CAF1 66609 91 - 1 AAUAAUUUUUCCAUUCUACAAUUGAUUUUUCUGGGUGUACCCAACGCAGCUGCACUACCUCCAGCCAGCUGCUGCUUUCGCCGGCAUUGUU .................(((((.........((((....))))..(((((((..((......)).))))))).(((......)))))))). ( -19.80) >DroEre_CAF1 67406 90 - 1 AAUCAUUUUUCAAUUGCACAAUUGAUUUUUCUGGGUGUACCCA-UGCAGCUGCACUACCUCCAGUCAGCUGCUGCUUUCGCCGGCAUUGUU .........((((((....))))))......((((....))))-.(((((((.(((......))))))))))((((......))))..... ( -25.20) >DroYak_CAF1 65641 90 - 1 AAUAAUUUUUCAAUUGCACAAAUGAUUUUUCUGGGUGUACCCA-UGCAGCCGCACUACCUCCAGUCAGCUGCUGCAUUCGCCGGCAUUGUU ..........((((.((...............(((....)))(-((((((.(((((......)))..)).)))))))......)))))).. ( -21.20) >consensus AAUAAUUUUUCCAUUCUACAAUUGAUUUUUCUGGGUGUACCCA_UGCAGCUGCACUACCUCCAGCCAGCUGCUGCUUUCGCCGGCAUUGUU .................((((..........((((....))))..((((((((..........).)))))))((((......)))))))). (-16.38 = -16.86 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:03 2006