| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,239,195 – 24,239,290 |
| Length | 95 |
| Max. P | 0.684457 |
| Location | 24,239,195 – 24,239,290 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 77.17 |
| Mean single sequence MFE | -28.10 |
| Consensus MFE | -19.32 |
| Energy contribution | -19.18 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.684457 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24239195 95 + 27905053 AC--AGCGAU-------------GGAGUCAG-CCAUAGAUAAAGCUUAGAUGCGCAAAGCGUAUCGAGUUUCUAUUAUCUCU--------GCGAAAACGUCGCGACGUCUGGGAGUCGA ..--.(((((-------------(...((.(-(...(((((((((((.(((((((...))))))))))))....))))))..--------))))...))))))(((........))).. ( -31.40) >DroVir_CAF1 29303 107 + 1 AC--AGCGGAAAAUGUAGAUGGAGAAGGCAG-CCAUAGAUAAAGCUUAGAUGCGCACAGCGUAUCGAGUUUCUAUUAUCUCU--------G-GAAAACGUCGCGACGUCUAGGAGUCGA ..--..(((....(.((((((..(..(((..-(((.(((((((((((.(((((((...))))))))))))....)))))).)--------)-).....))).)..)))))).)..))). ( -30.40) >DroPse_CAF1 63594 106 + 1 ACACAUCCAA-------------AGAGUCAGGCCAUAGAUAAAGCUUAGAUGCGCAAAGCGUAUCGAGUUUCUAUUAUCUUCUCGCCGUGGAGGAACCGUCGCGACGUCUGGGAGUCGA .....(((..-------------((((((.(((...(((((((((((.(((((((...))))))))))))....))))))....)))(((..(....)..)))))).))).)))..... ( -33.40) >DroWil_CAF1 21856 87 + 1 AC--AAC---------------------------CCAGAUAAAGCUUAGAUGCGCAAAGCGUAUCGAGUUUCUAUUAUCUUUUUUC---GGAGAAAACGUCGCGACGUCUAGGAGUCGA ..--...---------------------------...(((.((((((.(((((((...)))))))))))))......((((.....---.))))....))).((((........)))). ( -20.10) >DroMoj_CAF1 11526 107 + 1 AC--AGCGGAAAAUGUAGAUAGGGAGGGCAG-ACAUAGAUAAAGCUUAGAUGCGCACAGCGUAUCGAGUUUCUAUUAUCUCU--------G-GAAAACGUCGCGACGUCUAGGAGUCGA ..--..(((....(.(((((.(.((.(....-.((.(((((((((((.(((((((...))))))))))))....)))))).)--------)-.....).)).)...))))).)..))). ( -26.80) >DroAna_CAF1 59888 95 + 1 AC--AACGGA-------------GGAGUCAG-CCAUAGAUAGAGCUUAGAUGCGCCAAGCGUAUCGAGUUUCUAUUAUCUCU--------GGAAAAACGUCGCGACGUCUAGGAGUCGA ..--......-------------(..((...-(((.(((((((((((.(((((((...)))))))))))))....))))).)--------))....))..).((((........)))). ( -26.50) >consensus AC__AGCGGA_____________GGAGUCAG_CCAUAGAUAAAGCUUAGAUGCGCAAAGCGUAUCGAGUUUCUAUUAUCUCU________G_GAAAACGUCGCGACGUCUAGGAGUCGA ....................................(((((((((((.(((((((...)))))))))))))....)))))......................((((........)))). (-19.32 = -19.18 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:01 2006