| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,225,563 – 24,225,663 |
| Length | 100 |
| Max. P | 0.972650 |
| Location | 24,225,563 – 24,225,663 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 76.70 |
| Mean single sequence MFE | -27.68 |
| Consensus MFE | -17.34 |
| Energy contribution | -16.57 |
| Covariance contribution | -0.78 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.63 |
| SVM decision value | 1.70 |
| SVM RNA-class probability | 0.972650 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24225563 100 + 27905053 ----GAAUGUGUGCGAUAAGUGGAAACAAGCUGACAUUUAUGCAGUUUGCCCAGC----CAGCCUGCAGGCAAGCGUUCAAGCAGAGCAUAGCUAAAG-CAAAAGCAAA ----...(((.(((......((....))(((((...........(((((((..((----......)).)))))))((((.....)))).)))))...)-))...))).. ( -28.40) >DroPse_CAF1 48744 97 + 1 CACAAGAAGUGUGCGAUAACUGGAAACAAGCUGACAUUUAUGCAGUUUGC-CGGC----AAGCCUGCAGGCAACCGCUCAAGCACAGCAGAGCACAUA-CACA------ ........((((((......((....)).((((...........((((((-.((.----...)).))))))....((....)).))))...)))))).-....------ ( -30.00) >DroWil_CAF1 5709 88 + 1 ----AAAAGUGUGCGAUAACUGGAAACAAGCUGACAUUUAUGCAGUUUGCCCAAC----AAGCCUGCAGGCAACUGCUCAAGCAUGGCAUACAACA------------- ----....((((((.((...(((...(((((((.((....))))))))).)))..----..((..((((....))))....)))).))))))....------------- ( -29.70) >DroYak_CAF1 51139 103 + 1 ----AAAUGUGUGCGAUAAGUGGAAACAAGCUGACAUUUAUGCAGUUUGCCCAGCCAGCCAGCCUGCAGGCAAGCGUUUAAGCAGAGCAUAGCAAA--GGAAAAGCAAA ----..((((.(((......(((...(((((((.((....))))))))).....)))((..(((....)))..))......)))..)))).((...--......))... ( -24.40) >DroAna_CAF1 46397 80 + 1 -------AGUGUGCGAUAAGUGGAAACAAGCUGACAUUUAUGCAGUUUGCCCAGC----CAGCCUGCAGGCGACUGUUCAACCGGAGCAGA------------------ -------.((.((((.....(((...(((((((.((....))))))))).....)----))...)))).))..((((((.....)))))).------------------ ( -24.00) >DroPer_CAF1 48685 98 + 1 CAGAAGAAGUGUGCGAUAACUGGAAACAAGCUGACAUUUAUGCAGUUUGCUCGGC----AAGCCUGCAGGCAACCGCUCAAGCACAGCAGAGCACAUA-CACA------ ........((((((......((....)).((((.......((((((((((...))----))).))))).......((....)).))))...)))))).-....------ ( -29.60) >consensus ____AAAAGUGUGCGAUAACUGGAAACAAGCUGACAUUUAUGCAGUUUGCCCAGC____AAGCCUGCAGGCAACCGCUCAAGCAGAGCAGAGCACA___CA_A______ .........((.(((.....(((...(((((((.((....))))))))).)))........(((....)))...))).))............................. (-17.34 = -16.57 + -0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:58 2006