| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,223,333 – 24,223,431 |
| Length | 98 |
| Max. P | 0.586398 |
| Location | 24,223,333 – 24,223,431 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 74.83 |
| Mean single sequence MFE | -11.14 |
| Consensus MFE | -8.95 |
| Energy contribution | -9.07 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -0.94 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.586398 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24223333 98 + 27905053 CACUUUUCCAUUUUCCCG-U-UUCUCCAUUUCCCACCAAAACUCUAUCCAUUUCCAGCCAGCGGCAUUUUCUUGUGCUCUGCUAAGCACUAAGCGCAUUU ................((-(-((.................................(((...)))........(((((......))))).)))))..... ( -11.00) >DroSim_CAF1 49950 98 + 1 CACUUUUCCAUUUCCCCG-U-UUCUCCAUUUCCCACCAAAACUCUAUUCAUUUCCAGCCAGCGGCAUUUUCUUGUGCUCUGCUAAGCACUAAGCGCAUUU ................((-(-((.................................(((...)))........(((((......))))).)))))..... ( -11.00) >DroAna_CAF1 44213 88 + 1 AGCUCACCCACUCACCCAGCUUCAUCCGUUUU------------AUUCCACUCCCCGCCAGAGGCGUUUUCUUUUGCUCUGCUAAGCACUAAGCGCAUUU ((((.............))))...........------------......(((.......)))((((((.....((((......))))..)))))).... ( -11.42) >consensus CACUUUUCCAUUUACCCG_U_UUCUCCAUUUCCCACCAAAACUCUAUCCAUUUCCAGCCAGCGGCAUUUUCUUGUGCUCUGCUAAGCACUAAGCGCAUUU ........................................................(((((.(((((......))))))))....((.....)))).... ( -8.95 = -9.07 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:57 2006