| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,221,438 – 24,221,535 |
| Length | 97 |
| Max. P | 0.791014 |
| Location | 24,221,438 – 24,221,535 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.27 |
| Mean single sequence MFE | -21.41 |
| Consensus MFE | -7.31 |
| Energy contribution | -8.37 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.34 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.791014 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24221438 97 - 27905053 -----------------GCAAAAUAUUUCAUUUAAUUUUCAAGUUUAACCCAAACUCAA--CUCAACUUGAGAAAUCUUUGGCCAAAUUGUUGGG-CAAUGGCCGCCAGGCAAAG---AA -----------------..................((((((((((..............--...)))))))))).((((((.((((....)))).-)....(((....)))))))---). ( -19.63) >DroGri_CAF1 17390 93 - 1 -----------------CAAAAGUACUUAAUUUAAUUUGAAAGUUUAAGCCAAUAUCAA--CUCAAUUUGAGAAAUCUUUAUCCAAAUUGUUCAGCCAACGGCCA-----AAAAC---AA -----------------.........................((((..(((........--..(((((((.((........)))))))))..........)))..-----.))))---.. ( -11.65) >DroEre_CAF1 48863 97 - 1 -----------------GCAAAAUAUUUCAUUUAAUUUUCAAGUUUAACCCAAACUCAA--CUCAACUUGAGAAAUCUUUGGCCAAAUUGUUGGG-CAAUGGCCGCUGGCCAAAG---AA -----------------..................((((((((((..............--...)))))))))).((((((((((....((..((-(....))))))))))))))---). ( -25.73) >DroWil_CAF1 1028 102 - 1 -----------------CAAAAAUAUUUCAUUUAAUUUUCAAGUUGAACCCAAACUCUGGCAUCAACUUGAGAAAUCUUUGGCCAAAUUGUUCAA-CAACGGCCUCAAGCGGAGGUGGAC -----------------......((((((......((((((((((((..(((.....)))..))))))))))))......((((...(((.....-))).)))).......))))))... ( -27.00) >DroAna_CAF1 42415 114 - 1 CUCUGGCCGAGUAUCUCGCAAAAUAUUUCAUUUAAUUUUCAAGUUUAACCCAAACUCAA--CUCGACUUGAGAAAUCUUUGGCCAAAUUGUUCGG-CAACGGCCGCCAGUCAUGG---CG ...((((((((...)))..................((((((((((..............--...))))))))))......)))))....(..((.-...))..)((((....)))---). ( -29.03) >DroPer_CAF1 44514 85 - 1 -----------------GCAAAAUAUUUCAUUUAAUUUUCAAGUUUAACCCAAACUCAA--CUCAACUUGAGAAAUCUUU-----------UGGC-CAACGGCCGCCAGC-AACG---AC -----------------((................((((((((((..............--...))))))))))......-----------.(((-(...))))....))-....---.. ( -15.43) >consensus _________________GCAAAAUAUUUCAUUUAAUUUUCAAGUUUAACCCAAACUCAA__CUCAACUUGAGAAAUCUUUGGCCAAAUUGUUCGG_CAACGGCCGCCAGCCAAAG___AA ...................................((((((((((...................))))))))))......((((................))))................ ( -7.31 = -8.37 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:54 2006