| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,216,989 – 24,217,084 |
| Length | 95 |
| Max. P | 0.692662 |
| Location | 24,216,989 – 24,217,084 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.40 |
| Mean single sequence MFE | -22.58 |
| Consensus MFE | -13.56 |
| Energy contribution | -13.17 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.692662 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24216989 95 - 27905053 ----------------------AUUCAGUGAA---AGCGAGCUUAGCGGCUUAAAGUAAUUUAUGAUCCGUAAAGCAAGGAAACGGCUAAAUGCCGGCAUAUGGCAGGUCAGCAAUUGAA ----------------------.((((((...---.((..((((.((((..((((....))))....)))).))))..(....)((((...(((((.....))))))))).)).)))))) ( -27.60) >DroPse_CAF1 40357 111 - 1 GUAUAUAAACAACAAGAAGAGCAUUCAGU---------AAACUGAGCAGCUUAAAAUAAUUUAUGAUGCUUAAAGCAAGUAAAUGGCUAAAUGCCGGCAUAUGGCAGGUCAGCAAUCGAA ..................((((.(((((.---------...)))))..))))......((((((..(((.....))).)))))).((((..(((((.....)))))..).)))....... ( -23.00) >DroGri_CAF1 13069 97 - 1 ----------------------AG-CAAUAAGAACAACAAGCUUGGCAGCUUAAAAUAAUUUAUUAAGCUUAAAGUAAGUAAAUUGCUUAAUCCAGGCAUAUGGCAGGUCAGCAAUCGAG ----------------------.(-(..............((((((.(((((((.........)))))))..((((((.....))))))...))))))...(((....)))))....... ( -19.90) >DroEre_CAF1 44419 92 - 1 -------------------------CAGUGAA---AGCGAGCUUAGCGGCUUAAAGUAAUUUAUGAUCCUUAAAGCGAGGAAAUGGCUAAAUGCCGGCAUAUGGCAGGUCAGCAAUCGAA -------------------------...(((.---.(((((((....)))))..............(((((.....)))))..(((((...(((((.....))))))))))))..))).. ( -21.00) >DroYak_CAF1 42192 92 - 1 -------------------------CAGUGAA---AGCGAGCUUAGCGGCUUAAAGUAAUUUAUGAUCCUUAAAGCGAGGAAACGGCUAAAUGCCGGCAUAUGGCAGGUCAGCAAUCGAA -------------------------...(((.---.(((((((....)))))...........(((((.....(((..(....).)))...(((((.....))))))))))))..))).. ( -22.40) >DroAna_CAF1 37393 94 - 1 ----------------------AU-CAGCGAA---AGCAAGCUUAGCAGCUUAAAAUAAUUUAUGAUGCUUAAAGUAAGUAAAUGGCUAAAUGCCGGCAUAUGGCAGGUCAGCAAUCGAA ----------------------.(-((((...---.))(((((....)))))...........)))((((((...))))))..(((((...(((((.....))))))))))......... ( -21.60) >consensus ______________________AU_CAGUGAA___AGCAAGCUUAGCAGCUUAAAAUAAUUUAUGAUCCUUAAAGCAAGGAAAUGGCUAAAUGCCGGCAUAUGGCAGGUCAGCAAUCGAA ......................................(((((....)))))..............(((((.....)))))....(((...(((((.....)))))....)))....... (-13.56 = -13.17 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:49 2006