Locus 9061

Sequence ID 3R_DroMel_CAF1
Location 24,214,956 – 24,215,070
Length 114
Max. P 0.595937
window14509

overview

Window 9

Location 24,214,956 – 24,215,070
Length 114
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 87.37
Mean single sequence MFE -31.52
Consensus MFE -20.98
Energy contribution -23.02
Covariance contribution 2.04
Combinations/Pair 1.10
Mean z-score -2.09
Structure conservation index 0.67
SVM decision value 0.13
SVM RNA-class probability 0.595937
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24214956 114 + 27905053
UUAUUCAAGAAAGUAAGAAA----UUUGCAAUUAGUUGCGGAUGAUUUCUGACAGUGUGCGGUUCUCCUGCUUUUAUUUAUGCAAAUUUUCGGGUUGUUGCACUUGCGGCGACUCUCA
........((......((((----((((((..(((..((((..((...(((.(.....)))).))..))))..)))....)))))))))).((((((((((....)))))))))))). ( -32.00)
>DroSec_CAF1 37591 118 + 1
UUUUUCAAGUAACUUUGAAAUGAAGUUGCAAUUAGUUGCGGAUGAUUUCUGGCAGUGUGUGGUUCUACUGCUUUUAUUUAUGCAAAUUUUCGGGUUGUUGCACUUGCGGCGACUCUCA
........((((((((.....))))))))......(((((...(((....(((((((........)))))))...)))..)))))......((((((((((....))))))))))... ( -35.60)
>DroSim_CAF1 41545 118 + 1
UUUUUCAAGUAAUUUUGAAGUGAAGUUGCAAUUAGUUGCGGAUGAUUUCUGGCAGUGUGCGGUUCUCCUGCUUUUAUUUAUGCAAAUUUUCGGGUUGUUGCACUUGCGGCGACUCUCA
..(((((((....))))))).(((.(((((..(((..((((..((...(((........))).))..))))..)))....)))))...)))((((((((((....))))))))))... ( -32.20)
>DroEre_CAF1 42345 118 + 1
CCUAACAAAUUACUUUCAAAUGAAGCUGCAAUUAGUUGCUAAUGAUUUCUGACAGUGUGCGUCUCUUCUGGUUUUAUUUAUGCAAAUUUUCGGGUUGUUGCACUUGCGGCGACUCUCA
.................((((((((((((((....))))...........(((.......)))......))))))))))............((((((((((....))))))))))... ( -25.60)
>DroYak_CAF1 40105 118 + 1
UUUUUCAAAUUACUUUCAAAUAAAGUUGCACUCAGUUGCCAAUGAUUUCUGGCAGUGUGCGGCUCUUCUGCUUUUAUUUAUGCAAAUUUUCGGGUUGUUGCACUUGCGGCGACUCCCU
.......................((((((((....((((((........)))))).))))))))....(((..........))).......((((((((((....))))))))))... ( -32.20)
>consensus
UUUUUCAAGUAACUUUGAAAUGAAGUUGCAAUUAGUUGCGGAUGAUUUCUGGCAGUGUGCGGUUCUCCUGCUUUUAUUUAUGCAAAUUUUCGGGUUGUUGCACUUGCGGCGACUCUCA
........((((((((.....))))))))......(((((...(((....(((((............)))))...)))..)))))......((((((((((....))))))))))... (-20.98 = -23.02 +   2.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:47 2006