Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,057,069 – 3,057,159 |
Length | 90 |
Max. P | 0.918724 |
Location | 3,057,069 – 3,057,159 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 81.12 |
Mean single sequence MFE | -26.11 |
Consensus MFE | -18.81 |
Energy contribution | -20.15 |
Covariance contribution | 1.34 |
Combinations/Pair | 1.31 |
Mean z-score | -2.53 |
Structure conservation index | 0.72 |
SVM decision value | 1.12 |
SVM RNA-class probability | 0.918724 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3057069 90 - 27905053 -UUUUUGCCCAAAAAUUCUUGUGCAUUUCCGUACAGC-GUUUUUGUGUGGACCACUCAUUAGCAAUUUGUGUGGCUUUGGGGCGAGAAUGAG -(((((((((((((((.((.((((......)))))).-))))))....((.((((.((.........)).))))))...))))))))).... ( -25.50) >DroVir_CAF1 98737 84 - 1 UUUUUUGCACAAAAAUUCUUGUGCAUUUCCGCAGCUCUGUUUUUUUGCCCGCUGCUCAUUUGCAAAUUGUG-UUC---GGUGCAAAAA---- .(((((((((..((.......((((.....(((((...((......))..))))).....)))).......-)).---.)))))))))---- ( -23.04) >DroGri_CAF1 56483 83 - 1 UUUUUUGCACAAGAAUUCUUGUGCAUUUCCGCAGAGCAGUUUUU--GCAUGCUGCUCAUUUGCAAUUUGUGUGGC---GUAGCAAAAA---- .....((((((((....)))))))).....((((((((((....--....)))))))...)))..(((((.....---...)))))..---- ( -27.50) >DroSec_CAF1 44045 90 - 1 -UUUUUGCCCAAAAAUUCUUGUGCAUUUCCGUACAGC-GUUUUUGUGUGGGCCACUCAUUUGCAAUUUGUGUGGCUUUGGGACGAGAAUGAG -((((((((((((...............((((((((.-....))))))))(((((.((.........)).))))))))))).)))))).... ( -26.10) >DroEre_CAF1 45484 90 - 1 -UUUUUGCUCAAAAAUUCUUGUGCAUUUCCGUACAGC-GUUUUUGUGUGGGCCACUCAUUUGCAAUUUGUGUGGCUCUGGGGCGAGAAUGAA -(((((((((((((((.((.((((......)))))).-))))))....(((((((.((.........)).)))))))..))))))))).... ( -29.20) >DroYak_CAF1 46098 90 - 1 -UUUUUGCCCAAAAAUUCUUGUCCAUUUCCGUACAGC-GUUUUUGUGUGGGCCACUCAUUUGCAAUUUGCGCGGCUUUGGGGCGAGAAUGAA -.............((((((((((....((((...((-(...(((((((((...)))))..))))..))))))).....))))))))))... ( -25.30) >consensus _UUUUUGCCCAAAAAUUCUUGUGCAUUUCCGUACAGC_GUUUUUGUGUGGGCCACUCAUUUGCAAUUUGUGUGGCUUUGGGGCGAGAAUGA_ .(((((((((((((((...(((((......)))))...))))))....(((((((.((.........)).)))))))..))))))))).... (-18.81 = -20.15 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:06 2006