Locus 9059

Sequence ID 3R_DroMel_CAF1
Location 24,214,137 – 24,214,233
Length 96
Max. P 0.611327
window14505

overview

Window 5

Location 24,214,137 – 24,214,233
Length 96
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 82.47
Mean single sequence MFE -25.40
Consensus MFE -17.62
Energy contribution -19.10
Covariance contribution 1.48
Combinations/Pair 1.18
Mean z-score -1.69
Structure conservation index 0.69
SVM decision value 0.16
SVM RNA-class probability 0.611327
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24214137 96 - 27905053
ACACACAUUUGCAUAGCGCGCGAAAGUUUAAUUAAGUUUAAAUUUUGCAUGCGCUGGUACUAAUUUUC--------------CGUGCGAAGGUCACAGCAACUUGCGAAU
......((((((((((((((.((((((((((......))))))))).).)))))))............--------------.((((....).))).......))))))) ( -25.40)
>DroSec_CAF1 36763 94 - 1
--ACACGUUUGCAUAGCGCGCGAAAGUUUAAUUAAGUUUAAAUUUUGCAUGCGCUGGUACUAAUUUUC--------------CGUGCGAAGGUCACAGCAACUUGCAAAU
--....((((((((((((((.((((((((((......))))))))).).)))))))............--------------.((((....).))).......))))))) ( -26.00)
>DroSim_CAF1 40714 95 - 1
-CACACAUCUGCAUAGCGCGCGAAAGUUUAAUUAAGUUUAAAUUUUGCAUGCGCUGGUACUAAUUUUC--------------CGUGCGAAGGUCACAGCAACUUGCAAAU
-........(((((((((((.((((((((((......))))))))).).)))))))............--------------.((((....).))).......))))... ( -23.40)
>DroEre_CAF1 41513 94 - 1
--ACCCAUUUGCAUGGCGCGCGAAAGUUUAAUUAAGUUUAAAUUUUGCAAGCGCUGGUACUAAUUUCC--------------CUUGCGAAGGUCACAGGAACUUGCGAAU
--....(((((((.(((((((.(((((((((......)))))))))))..))))).........((((--------------..(((....).))..))))..))))))) ( -25.20)
>DroYak_CAF1 39275 96 - 1
ACACGCAUUUGCGAAGCGCGUGAAAGUUUAAUUAAGUUUAAAUUUUGCAUGCGCUGGUACUAAUUUUC--------------UCAGCGAAGGUCACAGGAACUUGCGAAU
...((((..(((..(((((((((((((((((......))))))))).)))))))).))).....((((--------------(..((....))...)))))..))))... ( -28.90)
>DroPer_CAF1 37906 107 - 1
ACAUGCACUUGC--ACCGCGGGAAAGUUUAAUUAAGUUUAAAUUUUGCAUGCACCAGCAUUAAUUUGCUUAGCCACAGAGAGAGAGCGAAGGUCACAUACAC-AGCGGAU
...(((....))--)((((.(.(((((((((......))))))))).).((.(((((((......))))..(((.(.....).).))...))))).......-.)))).. ( -23.50)
>consensus
_CACACAUUUGCAUAGCGCGCGAAAGUUUAAUUAAGUUUAAAUUUUGCAUGCGCUGGUACUAAUUUUC______________CGUGCGAAGGUCACAGCAACUUGCGAAU
......((((((((((((((.((((((((((......))))))))).).)))))))...........................((((....).))).......))))))) (-17.62 = -19.10 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:43 2006